Ligand parameters

    Parameter Meaning Possible values Default
    Ligand.DrawType Draw type of all ligands/small molecules on the scene "Wire", "Stick", "Ball", "BallAndStick", "StickAndBall", "BallAndWire", "WireAndBall", "Spacefill" BallAndStick
    Ligand.ColorType Color type of all ligands/small molecules on the scene "Constant", "CPK" CPK
    Ligand.Quality Quality of all ligands/small molecules on the scene "High", "Medium", "Low" Medium
    Ligand.Hydrogens Hydrogens of ligands are displayed or not. Note that hydrogens are always calculated whether they are described in the input or not. true, false false
    Ligand.LonePairs Lone pairs of ligands are displayed or not. true, false false
    Ligand.BallRadius Radius of displayed balls in angstroms Double 0.4
    Ligand.BondRadius Radius of bond cylinders in ball&stick mode in angstroms Double 0.1
    Ligand.StickRadius Radius of bond cylinders in stick mode in angstroms Double 0.3
    Ligand.LineWidth Width of displayed lines in wire mode in pixels Double 2
    Ligand.BondDistance Gap between two lines/sticks representing a double bond. It is determined as a percentage of Bond radius. Integer 100
    Ligand.BondWidth Thickness of line/stick representing a double bond. It is expressed relative to the thickness of a single bond. Integer 50
    Ligand.SmoothStickStyle Smooth, shaded display of two colored bonds true, false false
    Ligand.ScaledBalls Are balls scaled according to vdW radius or have uniform size in ball mode or not true, false false
    Ligand.DisplayBondOrder Double, aromatic bonds are displayed differently from single bonds or not true, false true
    Ligand.Color The color used in constant color mode java.awt.Color #fff050