Bond Length

  • Checker searches for bond lengths different than the default setting.

  • Fixer :
    offers cleaning the structure by:

    • 2D clean or (clean);

    • partial clean (partialclean).

Example :

Bond Length Checker (bondlength)

Warning:

Fix

Clean (clean)

Detect short bonds

images/download/attachments/1806465/ex_bondlength_chsh.png
ex_bondlength_ch

images/download/attachments/1806465/ex_bondlength_fb.png
ex_bondlength_f

Detect long bonds

images/download/attachments/1806465/ex_bondlength_chl.png
ex_bondlength_ch

images/download/attachments/1806465/ex_bondlength_fb.png
ex_bondlength_f

Detect both bonds

images/download/attachments/1806465/ex_bondlength_chb.png
ex_bondlength_ch

images/download/attachments/1806465/ex_bondlength_fb.png
ex_bondlength_f

The current version of bond length checker examines chain bonds of 2D molecules. Partial clean is not available.

Bond length checker does not check the length of coordinate bonds and position variation bonds.