The bond pop-up menu appears when you right-click on a bond within the molecule. It allows you to make a number of changes to the selected bond. It contains options for bond-specific activities that also can be accessed from the Bond Menu.
| Menu Item | Submenu Items | Description | |
|---|---|---|---|
| Type | Single | Changes the selected bond type to Single. | |
| Double | Changes the selected bond type to Double. | ||
| Triple | Changes the selected bond type to Triple. | ||
| Aromatic | Changes the selected bond type to Aromatic. | ||
| Wedge bond types | Changes the selected bond to a Wedge bond type to represent a stereo bond: Single Up or Single Down. These bond types are active only in 2D. | ||
| Query bond types | Changes the selected bond to a bond type to be used in a query: Single Up or Down, Double Cis or Trans, Double C/T or Unspec, Single or Double, Single or Aromatic, Double or Aromatic, Any. | ||
| Coordinate | Changes the selected bond type to Coordinate. | ||
| Bold | Thickens the selected bond. | ||
| Hashed | Changes the selected bond hashed. | ||
| Topology | The following options can be set as bond property when the molecule is used as a query. | ||
| None | Removes defined bond topologies. | ||
| In Ring | The specified bond must be in a ring to score a hit. | ||
| In Chain | The specified bond must be in a chain to score a hit. | ||
| Reacting Center | The following bond property options can be set in case of drawing reaction search queries. See Reacting center bond for further query feature descriptions. | ||
| None | Removes added bond property. | ||
| Center | Specifies that the bond takes part in the reaction. | ||
| Make or Break | The assigned bond can form or disappear in the reaction. | ||
| Change | The assigned bond remains and can alter during the reaction. | ||
| Make and Change | The assigned bond can form, break,or change its type during the reaction. | ||
| Not Center | The assigned bond can not be the reaction center. | ||
| Stereo Search | Uses stereoconfiguration of specified double bond when the molecule is used as a query. | ||
| Arrange | Bring to Front | Brings the selected bond in front of the others. | |
| Send to Back | Sends the selected bond to the back of the others. | ||
| Align | Horizontally | Orients the selected bond horizontally. | |
| Vertically | Orients the bond vertically. | ||
| Group... | Creates a custom Substructure Group (S-group) | ||
| Add/Remove | Explicit Hydrogens | Add/Removes explicit H atoms, removes/add implicit H atoms. | |
| Map Atoms | |||
| Data | Attaches data | ||
| Multi-Center | Adds a multi-center attachment point representing a group of atoms. | ||
| Position Variation Bond | Create a variable point of attachment to represent a connection point to a group of atoms. | ||
| Transformation | Drag selection | ||
| Rotate in 3D | Options for rotation | ||
| Format... | Formats color, thickness and length of the selected bond. | ||
| Add to My templates | Adds the bond to the Advanced Template Toolbar | ||
| Edit properties.. | Adds bond properties. |