- Standalone Applications
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- Appendix A. Calculations
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- Pivoting tutorial
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- Table Standardizer
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- Forms Model Scripts
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- Edit Molecule Button
- TanimotoSimilarityButton
- TanimotoMultiple
- Execute Permanent Query Based On Its Name
- Open existing view in the same dataTree
- Export selection to file
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- Form Scripts
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- Creating New Entities
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- Java Plugins
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- New Features
- New Features in IJC Q3 2019
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- New Features in IJC Q2 2017
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- New Features in IJC 14.7.7
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- Instant JChem Licensing
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- Markush Editor
- Marvin Live
- Marvin Live user guide
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- Marvin Live install guide
- Marvin Live - cloud deployment
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- Marvin Live developer guide - resolver plugins
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- Marvin Live developer guide - export plugins
- Marvin Live developer guide - theme customization
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- Marvin Live developer guide - real time plugin templates
- Marvin Live configuration guide
- MarvinSketch
- Introduction to MarvinSketch
- MarvinSketch User's Guide
- MarvinSketch Getting Started
- MarvinSketch Graphical User Interface
- Canvas in MarvinSketch
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- Customizing MarvinSketch GUI
- Configurations of MarvinSketch
- Services module
- Working in MarvinSketch
- Structure Display Options
- Basic Editing
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- Substructure Groups in MarvinSketch
- Draw R-groups in MarvinSketch
- Draw link nodes
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- Atom lists and NOT lists
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- Markush structures in MarvinSketch
- How to draw query structures
- Biomolecules
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- Drawing reactions
- Use integrated calculations in Marvin
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- Marvin OLE User's Guide
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- MarvinSketch Installation and Upgrade
- MarvinSketch Licensing
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- MarvinView
- Introduction to MarvinView
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- MarvinView Installation and Upgrade
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- MarvinView Getting started
- How to Use MarvinView Features
- MarvinView Graphical User Interface
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- Molconvert
- Plexus Suite
- Quick Start Guide - Plexus Suite
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- Log in to Plexus Suite
- The Plexus Suite Dashboard
- Importing New Data
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- Browsing in Your Data Set
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- Searching in Your Database
- Saved Queries
- List Management
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- Calculating Molecular Properties for Single Compounds
- Adding calculated columns to tables
- Scaffold Based Enumeration
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- Registering Molecules in the Corporate Database
- ChemAxon Assay
- Charts view
- Plexus Suite Video Tutorials
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- Plexus Connect Authentication
- Sharing Schema Items Among Users
- Business Flags
- Row-level Security
- Building blocks
- Admin Tools
- Adding JavaScript Files for Custom Functionality
- Writing JavaScript Files for Custom Functionality
- Integration with ChemAxon's Compound Registration System
- Shared data sources in Plexus Connect
- Configuration Files
- Edit Views
- Simple table
- Installation and System Requirements of Plexus Suite
- Plexus Suite Licensing
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- Plexus Suite History of Changes
- Schema Refresh Without Restart
- Zosimos
- Toolkits and Components
- AutoMapper
- Calculator Plugins
- Introduction to Calculator Plugins
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- Background materials
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- Generate3D
- Isoelectric point (pI) calculation
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- pKa calculation
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- Tautomerization and tautomers
- Validation results
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- Theory of aqueous solubility prediction
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- Calculator Plugins Licensing
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- Biomolecule Toolkit
- ChemAxon Synergy
- Document to Structure
- JChem Base
- JChem Base Administration
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- Query Guide
- Search types
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- Query features JCB
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- Special search types
- Search options
- Tautomer search - Vague bond search - sp-Hybridization
- Search Options Guide
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- Reaction specific search options
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- Standardization JCB
- Hit display-coloring
- Appendix JCB
- Matching Query - Target Examples
- jcsearch Command Line Tool
- jcunique Command Line Tool
- Homology Groups and Markush Structures
- Query Guide
- JChem Base FAQ
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- JChem Choral
- JChem Neo4j Cartridge
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- JKlustor
- Markush Tools
- Marvin JS
- Getting Started with Marvin JS
- Marvin JS Installation and System Requirements
- Marvin JS Developer's Guide
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- Editor Overview
- Editor Canvas
- Dialogs
- Abbreviated groups dialog
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- Export dialog
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- Atom properties dialog in Marvin JS
- Pseudo atom dialog
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- R-group dialog
- R-logic dialog
- Set box color dialog
- Text dialog
- View Settings dialog
- Toolbars
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- Drawing and editing options
- Feature overview pages
- Keyboard Shortcuts in Marvin JS
- Editor Overview
- Marvin JS API Reference
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- Name to Structure
- Reactor
- Reactor User's Guide
- Introduction to Reactor
- Reactor Getting Started
- Reactor Concepts
- Reactor Examples
- Working with Reactor
- Specifying Reactions
- Specifying Reactants
- Reaction Mapping
- Reaction Rules
- Reactant Combinations
- Running Reactor
- Reactor Interfaces
- Reactor Application
- Reactor Command-line Application
- Reactor in Instant JChem
- Reactor in JChem for Excel
- Reactor in KNIME
- Reactor in Pipeline Pilot
- Reactor in Plexus Suite
- API, Web Services
- Glossary
- Reactor FAQ
- Reactor Licensing
- Reactor Getting Help and Support
- Reactor History of Changes
- Reactor Configuration Files
- Reactor User's Guide
- Screen
- Standardizer
- Standardizer User's Guide
- Standardizer Introduction
- Standardizer Getting Started
- Standardizer Concepts
- Working with Standardizer
- Standardizer Actions
- Add Explicit Hydrogens
- Alias to Atom
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- Aromatize
- Clean 2D
- Clean 3D
- Clear Isotopes
- Clear Stereo
- Contract S-groups
- Convert Double Bonds
- Convert Pi-metal Bonds
- Convert to Enhanced Stereo
- Create Group
- Dearomatize
- Disconnect Metal Atoms
- Expand S-groups
- Expand Stoichiometry
- Map
- Map Reaction
- Mesomerize
- Neutralize
- Remove Absolute Stereo
- Remove Atom Values
- Remove Attached Data
- Remove Explicit Hydrogens
- Remove Fragment
- Remove R-group Definitions
- Remove Stereo Care Box
- Replace Atoms
- Set Absolute Stereo
- Set Hydrogen Isotope Symbol
- Strip Salts
- Tautomerize
- Transform
- Ungroup S-groups
- Unmap
- Wedge Clean
- Remove
- Standardizer Transform
- Custom Standardizer Actions
- Remove Solvents
- Creating a Configuration Standardizer
- Interfaces Standardizer
- Standardizer Actions
- Standardizer Developer's Guide
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- Standardizer History of Changes
- Standardizer User's Guide
- Structure Checker
- Structure Checker User's Guide
- Introduction
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- Structure Checker Concepts
- Working with Structure Checker
- Checker List
- Abbreviated Group StrCh
- Absent Chiral Flag
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- Alias
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- Atropisomer
- Attached Data StrCh
- Bond Angle
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- Brackets
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- Circular R-group Reference
- Coordination System Error
- Covalent Counterion
- Crossed Double Bond
- Custom Checkers and Fixers
- Double Bond Stereo Error
- EZ Double Bond
- Empty Structure
- Explicit Hydrogen
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- Incorrect Tetrahedral Stereo
- Isotope
- Metallocene Error
- Missing Atom Map
- Missing R-group Reference
- Molecule Charge
- Multicenter
- Multicomponent
- Multiple Stereocenter
- Non-standard Wedge Scheme
- Non-stereo Wedge Bond
- OCR Error
- Overlapping Atoms
- Overlapping Bonds
- Pseudo Atom
- Query Atom
- Query Bond
- Racemate
- Radical
- Rare Element
- R-atom
- Reacting Center Bond Mark
- Reaction Map Error
- Relative Stereo
- R-group Attachment Error
- R-group Bridge Error
- R-group Reference Error
- Ring Strain Error
- Solvent
- Star Atom
- Stereo Care Box
- Stereo Inversion Retention Mark
- Straight Double Bond
- Substructure
- Three Dimension 3D
- Unbalanced Reaction
- Unused R-group Reference
- Valence Error
- Valence Property
- Wedge Error
- Wiggly Bond
- Wiggly Double Bond
- Creating a Configuration StrCh
- Interfaces StrCh
- Checker List
- Structure Checker Developer's Guide
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- Structure Checker Licensing
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- Structure Checker History of Changes
- Structure Checker User's Guide
- Structure to Name
- Third-party Integration
- Cross Product Documentation
- ChemAxon Configuration Folder
- Chemical Fingerprints
- Chemical Terms
- File Formats
- Basic export options
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- Document formats
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- Molecule file conversion with Molconverter
- Molecule Formats
- CML
- MDL MOL files
- Daylight SMILES related formats
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- Name
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- FASTA file format
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- Tripos SYBYL MOL and MOL2 formats
- XYZ format
- Gaussian related file formats
- Markush DARC format - VMN
- CSV
- Input and Output System
- License Management
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- Notice about CAS Registry Numbers®
- Other versions
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- Scientific Background
- Structure Representation
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- Aromaticity
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- Assigning stereochemistry descriptors
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- Deprecated and Removed Methods
- Relative configuration of tetrahedral stereo centers
- Iterator Factory
- Atom and bond-set handling
- Graphic object handling
- Supported Java Versions
- Legal
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- Document to Database
- Fragmenter
- MarvinSpace
- MarvinSpace User's Guide
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- MarvinSpace History of Changes
- Metabolizer
Simple Templates toolbar
If you only wish to use the 6 generic template structures without additional functions, you can use the Simple Templates Toolbar.
This toolbar is not visible by default. To make it visible, choose View > Toolbars > Simple Templates.
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Cyclopentane (house) |
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Pyrrole |
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Cyclopentane |
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Cyclohexane |
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Benzene |
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Naphthalene |