Special commands

    There are a few elements which are not part of the default configuration of MarvinSketch but you can add it via the customization dialog.

    These are:

    To add new elements to the default

    1. Select View <Editor Style< Customize.

    2. Choose the tab which the element will be added to. Menus / Popups/Toolbars/Keymap.

    3. Choose the option from the dropdown list in the upper panel.

    4. Click Add at the 'Contents' section.

    5. Select a Category in the opening Add commands dialog box

    6. Select an enty (a single command or a group of them) 'Commands' panel . The 'Details' panel summerizes the main feature(s) of the selected command.

    7. Click Add.

    8. Click Close or add a new command.

    Lone Pair Group

    The toolbar and the menu can be customized to contain the Lone Pair Group tool.

    Before adding this tool disable Automatic Lone Pair calculation ( Preferences<Structure ) to be able to set the lone pairs manually and make sure that View<Advanced<Lone Pairs option is enabled.

    Categories: Insert Lone Pair


    images/download/attachments/5317775/lonePairsIncrease_24.pngIncrease Lone Pair

    images/download/attachments/5317775/lonePairs0_24.png 0 Lone Pair

    images/download/attachments/5317775/lonePairs1_24.png1 Lone Pair

    images/download/attachments/5317775/lonePairs2_24.png2 Lone Pair

    images/download/attachments/5317775/lonePairs3_24.png3 Lone Pair

    images/download/attachments/5317775/lonePairs4_24.png4 Lone Pair

    Lone Pair Group

    Radical Group

    You can add the Radical Group images/download/attachments/5317775/radicalSwitch_24.png toolbar to your MarvinSketch configuration.

    Categories: Insert Radical .


    images/download/attachments/5317775/radicalSwitch_24.pngRadical switch

    images/download/attachments/5317775/radicals1_24.pngMonovalent radical and

    images/download/attachments/5317775/radicals0_24.pngRadical off

    Radical Group

    Free Radical Group

    You can add the Free Radical Group images/download/attachments/5317775/rad4_24.pngto your MarvinSketch configuration.

    Categories:Insert Free Radical


    0 radical,

    1 radical

    2 radicals

    3 radicals

    4 radicals

    images/download/attachments/5317775/radicalSwitch_24.pngIncrease Radical

    Free Radiacal Group

    The last one increases the number of radical electrons on the atom by one. The maximum number of radicals is 4.

    Manual Atom Map

    Categories: Structure

    Commands: Manual Atom Map

    images/download/attachments/5317775/reaction_map24_disabled.png Manual Atom Map can be added from Structure category.

    Commnads: Manual Atom Map-Unmap Group

    images/download/attachments/5317420/unmap_reaction24.png Unmap Atoms

    images/download/attachments/5317748/map4b.png Manual Atom Map

    Reaxys Generics

    This template library contains the generic abbreviation commonly used in the Reaxys database.

    Categories: Insert Template

    Commands: Reaxys generics

    images/download/attachments/5317775/reaxys24.png Reaxys generics

    Substitution Count

    Categories: Atom Properties


    Substitution Count off,

    Substitution Count as Drawn

    0 substituent

    1 substituent,

    2 substituent

    3 substituent

    4 substituent

    5 substituent

    6 substituent