Map Reaction

    This action assigns map numbers to the corresponding atoms on the two sides of the reaction arrow.


    • Select the mapping style as Complete , Matching , or Changing.

    • "Map reaction" can also Mark bonds that have changed in the reaction.

    • Keep existing mapping (on by default)

      Note : Reactions are mapped by the AutoMapper User's Guidetool.

      Action "mapreaction" considers only reactions; molecules or multiple fragments are not mapped.

      Example :

      Action Input Output
      Map Reaction (mapreaction) images/download/attachments/5311547/aromatize1_in.png map reaction input No action will be performed
      Map Reaction (mapreaction) images/download/attachments/5311547/map_atom2_in.png map reaction input images/download/attachments/5311547/map_atom2_out.png map reaction output