Europium LTS
  • Standalone Applications
    • ChemCurator
      • ChemCurator Getting Help and Support
      • ChemCurator History of Changes
      • ChemCurator Installation and System Requirements
      • ChemCurator Licensing
      • ChemCurator User's Guide
      • Command-Line Mode
      • Integration Server Administrator Guide
    • Compliance Checker
      • User Guide - Compliance Checker
        • Login in Compliance Checker
        • Single Check
        • File check
      • Admin Guide - Compliance Checker
        • Install Guide - Compliance Checker
          • System Requirements - Compliance Checker
          • Installing Compliance Checker
          • Old Linux Installer
        • Configuring Compliance Checker
        • Administration GUI
          • Login as Administrator
          • Update the regulations
          • System monitor
          • Category group editor
          • User-defined category editor
          • History
            • Database update history
            • File check history
            • Single check history
          • Report template editor
        • Integration API
        • Workflow tools
      • Compliance Checker Getting Help and Support
      • Compliance Checker History of Changes
        • Compliance Checker Software - Contents
          • Compliance Checker - Software
        • Compliance Checker Knowledge Base - Contents
          • Compliance Checker - Knowledge Base
      • Try out!
    • Compound Registration
      • Quick Start Guide
        • Register a new compound
        • Register a new lot
        • Register a new compound reviewing matches
        • Dealing with failed submissions
        • Register compounds without structures
      • Compound Registration User's Guide
        • Overview
        • Compound Registration Abbreviations
        • Definitions of Terms
        • Compound Registration Introduction
        • Login
        • Dashboard page
        • Autoregistration
          • Registration page
          • Register a Virtual Compound
        • Bulk Upload
        • Advanced Registration
          • Register from the Registration page
          • Registering from the Submission page
            • Registering new structures
            • Registering matching structures
            • Possible status messages - how to register
          • Staging area
            • Actions in the Staging area
          • Submission correction page
            • Workspace
            • Status message
            • Structure area
            • Data fields
            • Card
        • Search
          • Search option
            • Type of search
            • Match type
            • Search query
        • User Profile
        • Download
        • Browse page
          • Browser
          • Browse-card
          • Parent level amendment
          • Version level amendment
          • Lot level amendment
        • Appendix A. Calculations
        • Appendix B. Markush Structures
        • Multi-Component compounds
        • Restricted compounds
      • Configuration Guide
        • Administration page
          • Access Control
            • Users and groups
            • Groups and roles
            • Project based access
            • Authentication Providers
          • Forms and Fields
            • Form Editor
            • Dictionary Manager
          • Chemistry
          • Chemical structures
          • General settings
          • Workflow
          • Integration
          • Tools
          • Notifications
          • Pages Configuration
          • Navigation
        • Authentication
        • Database Connections
        • E-mail Server and User Repository
        • Message Queues
      • Deployment Guide
        • Compound Registration Installation requirements
        • Database setup
        • Deploying the application
        • Install through the wizard
        • Upgrade guide
        • Command Line Tools
      • Compound Registration FAQ
      • Compound Registration System Requirements
      • Compound Registration History of Changes
      • API documentation
    • Instant JChem
      • Instant Jchem User Guide
        • Getting Started
          • About Instant JChem
          • Additional Help Material
          • Instant JChem Terminology
          • How the Instant JChem items fit together
          • Windows Menus and Toolbars
          • Instant JChem Quick Start
          • User Settings
          • Licenses
          • Instant JChem Dictionary
        • IJC Projects
          • About Projects
          • Creating a new project
          • Shared Projects
        • IJC Schemas
          • About IJC Schemas
          • Adding a New Schema
          • Connecting to an existing IJC schema
          • Logging in to an IJC schema
          • Editing Schema Connection Settings
          • Deleting a schema
          • Backing up and restoring schemas
        • Viewing and Managing Data
          • Viewing Data
            • Multiple Data Result Set
            • Viewing multi-entity data
          • Form View
            • Design Mode
            • Browse Mode
            • Query Mode
          • Grid View in Instant JChem
          • Form Widgets
            • Standard Widgets
              • TextField Widget
              • TextArea Widget
              • Button Widget
              • Label Widget
              • CheckBox Widget
              • Date Widget
              • List Widget
              • Browser Widget
              • Table Widget
              • Multi Field Sheet Widget
              • MolPane Widget
              • Structure Matrix Widget
              • TreeTable Widget
            • Visualisation Widgets
              • Histogram Widget
              • Scatter Plot Widgets
              • Radar Chart Widget
              • Box Plot Widget
            • Container Widgets
              • Panel Widget
              • Tabbed Panel Widget
          • Conditional Formatting
            • Step by Step guide
            • Creating Templates
          • Copying views
          • Adding and Deleting Rows
            • Editing Multiple Values
          • Printing
          • Renderers
          • Pivoting in IJC
        • Lists and Queries
          • Running Queries
            • Query Overview
            • Query Builder
            • Building Queries
            • Executing Queries
            • Form Based Query
            • Federated Search
          • List and Query Management
          • Cherry Picking
        • Collaboration
          • Sharing Items
          • Instant JChem URLs
          • Sharing data with other applications
        • Import and Export
          • Using File Import
          • RDF File Import
          • Merging Data
          • Exporting Data
        • Editing Databases
          • About Primary Keys
          • Controlling Editability
          • Editing Schemas
            • Editing Data Trees
            • Editing Entities
            • Editing Existing Schemas
            • Editing Fields
              • Calculated Fields
              • Pick list
              • URL Fields
              • Standard Fields
            • Editing Relationships
          • Schema Editor
          • Structure Views
          • Using Multiple Database Schemas
        • Relational Data
          • About Relationships
          • About Data Trees
          • Editing Child Data
        • Chemical Calculations and Predictions
          • About Chemical Calculations and Predictions
          • Adding Chemical Terms Fields
        • Chemistry Functions
          • Performing an Overlap Analysis
          • Standardizer - Standardizing Structure Files
          • Markush Enumeration in IJC
          • Reaction Enumeration
          • R-group analysis
        • Security
          • About Instant JChem Security
          • Changing Security Settings
          • Managing User Database
          • Managing Current Users
          • Security Templates
          • Row level security
          • Using database authentication
          • Oracle JDBC connection encryption
        • Scripting
        • Updating Instant JChem
          • About Updating Instant JChem
          • About Managing Plugins
          • Updating IJC
          • Managing IJC Update Centers
          • Installing Plugins Offline
          • Updating a Multi-User IJC Installation
          • Activating and Deactivating a Plugin
            • Plugin Manager - Downloaded
            • Plugins Manager - Available Plugins
            • Plugins Manager - Installed
            • Plugins Manager - Settings
            • Plugins Manager - Updates
        • Tips and Tricks
          • Memory Usage
          • Performance Tips
          • Database Implementation Notes
          • Using the database explorer
          • Change standardizer configuration for JChem table
          • Setting up cartridge tables for use in IJC
          • Triggers and sequences
            • Triggers and sequences - Derby
            • Triggers and sequences - MySQL
            • Triggers and sequences - Oracle
        • Instant JChem Tutorials
          • Building a relational form from scratch
          • Building more complex relational data models
          • Defining a security policy
          • Filtering items using roles
          • Lists and Queries management
          • Query building tutorial
          • Reaction enumeration analysis and visualization
          • SD file import basic visualization and overlap analysis
          • Using Import map and merge
          • Using Standardizer to your advantage
          • Pivoting tutorial
      • Instant JChem Administrator Guide
        • Admin Tool
          • Admin Tool connection
          • Clone operation
          • Finish Wizard
          • Migrate operation
          • Delete operation
          • Schema security operation
          • Unlock operation
          • Change owner operation
          • Create JWS files operation
          • Short Descriptions
            • ChangeOwnerShort
            • CloneShort
            • CreateSharedShort
            • DeleteShort
            • MigrateShort
            • RenameShort
            • SecurityShort
            • UnlockShort
          • Create *.ijs file for schema(s)
        • IJC Deployment Guide
        • Supported databases
        • JChem Cartridge
        • Using Oracle Text in Instant JChem
        • Deployment via Java Web Start
        • Startup Options
        • Shared project configuration
        • Accessing data with URLs
        • Instant JChem Meta Data Tables
        • Test to Production Metadata Migrator
        • Filtering Items
        • Deploying the IJC OData extension into Spotfire
        • Reporting a Problem
        • Manual Instant JChem schema admin functions
        • SQL Scripts for Manual Schema Upgrade
        • Database Row Level Security
        • JccWithIJC
        • Deploying Spotfire Middle Tier solution
      • Instant JChem Developer Guide
        • Working With IJC Architecture
        • IJC API
        • Groovy Scripting
          • Good Practices
          • Schema and DataTree Scripts
            • Simple SDF Exporter
            • Relational SDF Exporter
            • CDX File Importer
            • Data Merger or Inserter from an SDF file
            • Markush DCR Structures Exporter
            • Select Representative Member of Clusters
            • Table Standardizer
            • Populate a Table with Microspecies
            • Create a Diverse Subset
            • Pearson Linear Correlation Co-efficient Calculator
            • PDF Trawler
            • Simple Substructure Search
            • Intersecting Sets
            • Find Entries with Duplicated Field Value
            • Importing Multiple SDF Files
            • Calling External Tools
            • Create Relational Data Tree
          • Forms Model Scripts
            • Create New Form
            • Create New Grid
            • Create New Panel
            • Create New Tabbed Pane
            • Copy Existing Form
          • Button Scripts
            • Execute Permanent Query
            • Patent Fetcher Button
            • Batch Searching Button
            • Import or Export a Saved Query SDF Button
            • Back and Next Buttons
            • Add Annotations Button
            • Simple Structure Checker Button
            • Advanced Structure Checker Button
            • Calculate MolWeight and generate SMILES
            • Get Current User
            • Simple ChemicalTerms evaluator
            • Edit Molecule Button
            • TanimotoSimilarityButton
            • TanimotoMultiple
            • Execute Permanent Query Based On Its Name
            • Open existing view in the same dataTree
            • Export selection to file
            • Generate random resultset from actual resultset
          • Form Scripts
            • Drop Down Input Dialog
            • Log user and date upon row addition
            • Scripting hooks
          • Groovy Scriptlets
            • Buttons vs Scripts
            • Creating New Entities
            • Creating New Fields
            • Reading Molecules From a File
            • Insert or Update a Row
            • Evaluator
            • Create or Find a Relationship
            • Adding an Edge to a Data Tree
            • Exporting Data to a File
            • Connect to an External Database
            • Create a New ChemTerm Field
            • Create a New Dynamic URL Field
            • Create a New Static URL Field
        • Java Plugins
          • IJC Plugin Quick Start
          • IJC Hello World Plugin
          • IJC Plugin tutorial - MyAddField plugin
          • IJC Plugin tutorial - MyMathCalc plugin
          • IJC Plugin tutorial - Renderer Example
          • IJC Plugin tutorial - MySCServer webapp
          • IJC Plugin tutorial - MySCClient plugin
          • Java Plugins and Java Web Start
      • Instant JChem FAQ
      • Instant JChem Installation and Upgrade
        • Installation on Windows
        • Installation on Mac OS X
        • Installation on Linux or Solaris
        • Installation on Other Platforms
        • Uninstall
        • Changing Java Version
      • New Features
        • New Features in IJC Q3 2019
        • New Features in IJC Q2 2019
        • New Features in IJC Q1 2019
        • New Features in IJC Q4 2018
        • New Features in IJC Q3 2018
        • New Features in IJC Q2 2018
        • New Features in IJC Q1 2018
        • New Features in IJC Q4 2017
        • New Features in IJC Q3 2017
        • New Features in IJC Q2 2017
        • New Features in IJC Q1 2017
        • New Features in IJC Q4 2016
        • New Features in IJC Q3 2016
        • New Features in IJC Q2 2016
        • New Features in IJC Q1 2016
        • New Features in IJC Q4 2015
        • New Features in IJC Q3 2015
        • New Features in IJC Q2 2015
        • New Features in IJC Q1 2015
        • New Features in IJC 14.7.7
        • New Features in IJC Q4 2019
      • Instant JChem Licensing
      • IJC Getting Help and Support
      • Instant JChem System Requirements
        • Chart Testing
      • Instant JChem History of Changes
    • Markush Editor
      • Markush Editor Help and Support
      • Markush Editor History of Changes
      • Markush Editor Installation and System Requirements
      • Markush Editor Licensing
      • Markush Editor User's Guide
    • Marvin Live
      • Marvin Live user guide
      • Marvin Live history of changes
      • Marvin Live install guide
      • Marvin Live - cloud deployment
      • Marvin Live developer guide - sending data
      • Marvin Live developer guide - resolver plugins
      • Marvin Live developer guide - real time plugins
      • Marvin Live developer guide - export plugins
      • Marvin Live developer guide - theme customization
      • Marvin Live migration guide
      • Marvin Live developer guide - storage plugins
      • Marvin Live developer guide - real time plugin templates
      • Marvin Live configuration guide
    • MarvinSketch
      • Introduction to MarvinSketch
      • MarvinSketch User's Guide
        • MarvinSketch Getting Started
          • Start to draw in MarvinSketch
          • Select
          • Deleting in MarvinSketch
          • Move Rotate Zoom Scale
          • Tricks and Tips
        • MarvinSketch Graphical User Interface
          • Canvas in MarvinSketch
          • Menus of MarvinSketch
            • File Menu in MarvinSketch
            • Edit Menu in MarvinSketch
            • View Menu in MarvinSketch
            • Insert Menu
            • Atom Menu
            • Bond Menu
            • Structure Menu in MarvinSketch
            • Calculations Menu
            • Services Menu
            • Help Menu in MarvinSketch
          • Toolbars of MarvinSketch
            • General Toolbar in MarvinSketch
            • Tools Toolbar in MarvinSketch
            • Atoms Toolbar
            • Simple Templates toolbar
            • Advanced Templates Toolbar
            • Special Toolbars
              • Chemical Toolbar
              • Markush Toolbar
              • 3D Editing Toolbar
          • Pop-up Menus of MarvinSketch
            • Atom Pop-up Menu
            • Bond Pop-up Menu
            • Edit Pop-up Menu
            • Object Pop-up Menu
          • Status bar of MarvinSketch
          • Dialogs of MarvinSketch
            • Multipage Settings
            • Document Style
            • Template Library Manager
            • Edit Source
            • Customize
            • Where are the settings stored
            • Format Dialog
              • Atoms and Bonds
              • Graphics Objects
            • Periodic Table of Chemical Elements
              • Periodic Table tab
              • Advanced tab
                • Generic query atoms
                • Atom query properties
                • Periodic Table Groups
                • Special nodes and R-groups
                • Custom Properties
            • Preferences in MarvinSketch
              • Bonds tab
              • Structure tab
              • Text tab
              • Checkers tab
              • Services tab
              • Save-Load tab
              • 3D Options tab
              • Analysis box tab
            • Create Group Dialog
            • Attach data
            • Edit properties
            • About MarvinSketch
          • Shortcuts in MarvinSketch
          • Customizing MarvinSketch GUI
            • Basic changes
            • Advanced Changes
              • Menus tab
              • Pop-ups tab
              • Toolbars tab
              • Keymap tab
              • Special commands
              • Changing the default Look and Feel
          • Configurations of MarvinSketch
          • Services module
            • Set Services
            • Settings of the different service types
              • Local
              • HTTP Service
              • SOAP Service
        • Working in MarvinSketch
          • Structure Display Options
            • Customizing structure drawing styles
              • Drawing settings
              • Drawing styles
            • Structure Display
            • Color schemes
            • Display options for implicit and explicit Hydrogens
            • Displaying the label of carbon atoms
            • Error Highlighting in MarvinSketch
            • Saving Display Options
          • Basic Editing
            • Selecting a Structure
            • Copy-Paste and DragandDrop
            • Geometric transformation of structures and objects
              • Moving and Rotating
              • Scaling
              • Flip a molecule
              • Mirror a molecule
              • Central inversion of a molecule
            • Cleaning
            • Deleting a Structure
            • Editing the source
          • Drawing Simple Structures
            • How to Draw Atoms
            • How to Draw Bonds
            • How to Draw Chains
            • Sprouting
            • Merging Structures
            • Templates in MarvinSketch
            • Drawing stereocenters
            • How to draw coordination compounds
            • Insert-Edit new structure, fragment
            • Atom Label Editor
          • Drawing More Complex Structures
            • Substructure Groups in MarvinSketch
              • Abbreviated (superatom) groups
              • Polymers
                • Structure-based representation of polymers
                  • Structural repeating unit (SRU) polymers
                  • Repeating units with repetition ranges - Frequency variation
                  • Copolymers
                • Source-based representation of polymers
                • How to draw polymers
              • Unordered Mixtures and Ordered Mixtures
              • Charge of the group
            • Draw R-groups in MarvinSketch
            • Draw link nodes
            • Homology Groups in MarvinSketch
            • Atom lists and NOT lists
            • Position variation in MarvinSketch
            • Markush structures in MarvinSketch
            • How to draw query structures
            • Biomolecules
            • Atom, bond and molecule properties
          • Drawing reactions
            • Create Reactions
              • Automatic Plus Signs in Single step Reactions
              • Manual Plus Signs
            • Mapping Reactions
            • Electron flow arrows
          • Use integrated calculations in Marvin
          • Graphical objects
            • How to add, edit and format text
            • How to draw shapes
          • Import and export options
            • Open a molecule file
            • Saving a molecule file
            • Export to image
          • Multipage documents
            • How to create a multipage document
            • How to navigate in multipage documents
          • Printing in MarvinSketch
        • Chemical Features in MarvinSketch
          • Valence Check
          • Structure Checker in MarvinSketch
          • Charges, Isotopes, Radicals
            • Charges
            • Isotopes in MarvinSketch
              • Isotope List Editing
            • Radicals
          • Stereochemistry in MarvinSketch
          • Reaction schemes
          • Abbreviated groups - Superatom group
          • Query Features
            • R-groups in MarvinSketch
            • Link Nodes
            • Atom List and NOT List
            • Atom Properties
            • Generic Query Atom
            • Homology group
          • Attached Data
          • Calculations
            • Analysis box
            • Calculations Plugins in MarvinSketch
        • Marvin OLE User's Guide
          • Install and Uninstall
          • How to Use
          • Customize Marvin OLE editing mode
          • Redirecting other Vendors' OLE objects to Marvin OLE
          • Logging
          • Troubleshooting and Administration
          • Known Issues
        • Appendix for MarvinSketch
          • Trademarks
        • Tutorials
        • Additional information
      • MarvinSketch Developer's Guide
        • Customizing MarvinSketch GUI - Server Side
          • Customizing Marvin GUI
          • Customizing MarvinSketch GUI - Assign new action
          • Clipboard formats configuration
          • Configure the Attach Data Dialog
        • MarvinSketch: Parameters and Events
          • Parameters
            • JavaBeans parameters
              • Display parameters
                • Structure Templates
                • Query properties in molecule file formats
              • Structure display parameters
                • The shapely color scheme in Marvin
              • Structure parameters
              • Other parameters
          • Events fired by JavaBean
            • Action events
            • Property change events
        • Marvin Beans for Java
          • Marvin Beans API documentation
          • Marvin Beans Examples
            • MarvinSketch Examples
              • Marvin Sketch Simple Bean
              • MarvinSketch Images
              • MarvinSketch Structure Display Parameters
              • MarvinSketch Structure Templates
              • Text Box Example
                • JFileChooser Example
            • MarvinView Examples
              • MarvinView Simple Bean Example
              • MarvinView In JTable Example
              • MarvinView Table View Example
              • MarvinView Table View Example with Parameters
              • MarvinView JFileChooser Example
              • Image Generation Using Marvin Beans
              • Excel Sheet Generation Using Marvin Beans
              • Installation guide to jnlp examples
          • Marvin Beans Frequently Asked Questions
        • Marvin Services
          • Manage Marvin services
          • Service Implementations
            • Local Services
            • WSDL SOAP RPC Services
            • XML-RPC
            • JSON-RPC
            • HTTP
            • cxcalc integration
            • Chemical Terms integration
            • Instant JChem integration
            • JChem For Excel integration
          • Configuration of services
          • Calling Services
          • Viewing the results
        • Java Web Start
          • Introduction to Java Web Start
          • Marvin Sketch Examples
        • Report a bug
      • MarvinSketch Application Options
        • Java VM options in MarvinSketch
        • Running the Applications
      • MarvinSketch Installation and Upgrade
        • System Requirements for Marvin
        • Installation of MarvinSketch
        • Version Number
      • MarvinSketch Licensing
      • MarvinSketch Getting Help and Support
      • MarvinSketch Downloads
      • MarvinSketch History of Changes
        • Current version of MarvinSketch
        • All changes in reversed chronological order
    • MarvinView
      • Introduction to MarvinView
      • MarvinView Developer's Guide
        • MarvinView Parameters and Events
          • MarvinView Parameters
            • MarvinView JavaBeans parameters
              • MarvinView Display parameters
              • MarvinView Structure display parameters
              • MarvinView Structure parameters
              • MarvinView 3D and animation
                • RasMol Scripts
              • Molecule tables
                • The layout parameter
                • The param parameter
                • The celli and celli_j parameters
                • MarvinView Table View
              • MarvinView Other parameters
            • MarvinView Applet only parameters
          • Events fired by the JavaBean
          • Troubleshooting - MView and JMView tables
      • MarvinView Application Options
        • Usage MV
        • Options
          • Java VM options
          • Property colors in MarvinView
        • Running MarvinView
      • MarvinView Installation and Upgrade
        • System Requirements for MarvinView
        • Installation of MarvinView
        • Version Numbering of MarvinView
      • MarvinView User's Guide
        • MarvinView Getting started
        • How to Use MarvinView Features
          • Importing and Exporting Molecules
            • Loading Molecules into MarvinView
            • Saving Molecules
            • Printing Molecules
          • Editing Molecules
          • Structure Display Options in MarvinView
            • Molecule Format
            • Color schemes in MarvinView
            • Display options for implicit and explicit hydrogens in MarvinView
            • Marking Atoms
            • Error Highlighting
          • Manipulating the Molecule
          • How to Work with Multipage Molecular Documents
        • MarvinView Graphical User Interface
          • Dialogs of MarvinView
            • Preferences dialog in MarvinView
              • Display
              • Bonds
              • Structure tab in MarvinView
              • Checkers tab in MarvinView
              • Services tab in MarvinView
              • Save-Load tab in MarvinView
              • OLEServer
            • Edit Source dialog
            • Table Options
            • About Marvin View
          • Menus of MarvinView
            • File Menu in MarvinView
            • Edit Menu in MarvinView
            • View Menu in MarvinView
            • Table Menu
            • Structure Menu in MarvinView
            • Tools Menu
            • Pages
            • Help Menu in MarvinView
      • MarvinView Licensing
        • About ChemAxon Licensing - MarvinView
        • End User License Agreement:EULA - MarvinView
        • Installing licenses in MarvinView
          • Installing licences to MarvinView desktops
          • Installing licences to servers
          • Licensing MarvinView via Java Web Start
        • Merging license files - MarvinView
        • License FAQ - MarvinView
        • Licensing prior version 5.0 - MarvinView
      • MarvinView Getting Help and Support
      • MarvinView Downloads
      • MarvinView History of changes
        • Current version
        • Earlier versions
    • Molconvert
    • Plexus Suite
      • Quick Start Guide - Plexus Suite
      • Plexus Suite User Guide
        • Log in to Plexus Suite
        • The Plexus Suite Dashboard
        • Importing New Data
        • Exporting Your Data
        • Browsing in Your Data Set
          • Synchronized Database Views
        • Selecting Data
        • Searching in Your Database
          • Structure Search plexus
        • Saved Queries
        • List Management
        • Sorting Data
        • Sharing Data with Other Users
        • Calculating Molecular Properties for Single Compounds
        • Adding calculated columns to tables
        • Scaffold Based Enumeration
        • Reaction Based Enumeration
        • Registering Molecules in the Corporate Database
        • ChemAxon Assay
          • User guide for Assay
            • Processed data upload
            • Processed data view
          • Administration guide for Assay
          • Assay Release Notes
            • Manual for Migration from Procedure to Protocol
        • Charts view
      • Plexus Suite Video Tutorials
      • Plexus Suite Administrator Guide
        • Plexus Connect Authentication
        • Sharing Schema Items Among Users
        • Business Flags
        • Row-level Security
        • Building blocks
        • Admin Tools
          • Messaging
          • Getting the Plexus Backend and Frontend Log Files
        • Adding JavaScript Files for Custom Functionality
        • Writing JavaScript Files for Custom Functionality
        • Integration with ChemAxon's Compound Registration System
        • Shared data sources in Plexus Connect
        • Configuration Files
        • Edit Views
        • Simple table
      • Installation and System Requirements of Plexus Suite
      • Plexus Suite Licensing
        • About ChemAxon Licensing - Plexus Suite
        • End User License Agreement (EULA) - Plexus Suite
        • Installing Licenses
        • Merging License Files
        • Frequently Asked Questions about Licensing - Plexus Suite
        • License Report - Plexus Suite
      • Getting Help and Support for Plexus Suite
        • Troubleshooting for Plexus Suite
      • Plexus Suite FAQ
      • Plexus Suite Privacy Policy
      • Terms of Use for the Plexus Suite Demo Site
      • Plexus Suite History of Changes
      • Schema Refresh Without Restart
    • Zosimos
      • Zosimos User's Guide
        • Browser and device compatibility
        • Chemistry exercise types
          • Molecule representations
      • Getting Help and Support
  • Toolkits and Components
    • AutoMapper
      • AutoMapper User's Guide
    • Calculator Plugins
      • Introduction to Calculator Plugins
      • Calculator Plugins User's Guide
        • Physico-chemical plugins
          • HLB Predictor
          • Isoelectric Point Plugin
          • logD Plugin
          • logP Plugin
          • Major Microspecies Plugin
          • NMR Predictor
          • pKa Plugin
          • Solubility Predictor
          • Stereo Analysis - calculating stereo descriptors
          • Stereoisomer Generator Plugin
          • Tautomer Generation Plugin
        • Molecular modeling plugins
          • 3D Alignment Plugin
          • Charge Plugin
          • Conformer Plugin
          • Dipole Moment Calculation Plugin
          • Molecular Dynamics Plugin
          • Orbital Electronegativity Plugin
          • Polarizability Plugin
        • Structural property plugins
          • Elemental Analysis Plugin
          • Geometrical Descriptors Plugin
          • Huckel Analysis Plugin
          • Hydrogen Bond Donor Acceptor Plugin
          • Molecular Surface Area Plugin 3D
          • Polar Surface Area Plugin 2D
          • Refractivity Plugin
          • Resonance Plugin
          • Structural Frameworks Plugin
          • Topological Analysis Plugin
        • Markush Enumerator Plugin
          • Markush features
            • R groups
            • Atom lists
            • Bond lists
            • Link nodes CP
            • Repeating units
            • Position variation bonds
            • Homology Groups CP
          • Markush functionalities
            • Sequential enumeration
            • Selected part enumeration
            • Calculate library size
            • Random enumeration
            • Valence filter
            • Homology group enumeration
            • Scaffold alignment and coloring
            • Markush code generation
        • Training the Calculator Plugins
          • cxtrain command line tool
          • Training the logD Plugin
          • Training the logP Plugin
          • Training the pKa Plugin
        • cxcalc command line tool
          • cxcalc calculator functions
      • Calculator Plugins Developer's Guide
        • Calculator Plugins Web Services
        • Concurrent plugin API usage
        • Custom Calculator Plugin implementation
        • Integration of third-party calculations into Marvin and JChem
        • Introduction to developers
        • Plugin API usage examples
        • Using Calculator Plugins via API
      • Background materials
        • Calculation of partial charge distribution
        • Generate3D
        • Isoelectric point (pI) calculation
        • LogP and logD calculations
        • NMR model prediction
        • pKa calculation
        • Red and blue representation of pKa values
        • Tautomerization and tautomers
        • Validation results
        • Tautomerization and tautomer models of ChemAxon
        • Theory of aqueous solubility prediction
        • The tautomerization models behind the JChem tautomer search
      • Calculator Plugins Licensing
      • Calculator Plugins FAQ
      • Calculator Plugins Getting Help and Support
      • Calculator Plugins History of Changes
      • Calculator Plugins System Requirements
    • Biomolecule Toolkit
      • Biomolecule Toolkit Administrator's Guide
        • Biomolecule Toolkit Deployment Guide
          • Download Package
          • Biomolecule Toolkit System Requirements
          • System Environment Setup
            • Creating Environment Variables
          • Database Setup for Biomolecule Toolkit
          • Tomcat Deployment
          • License Files
          • Schema Initialization
          • Biomolecule Toolkit Docker Setup
            • Running the Biomolecule Toolkit Container
      • Biomolecule Toolkit API documentation
      • Biomolecule Toolkit History of Changes
    • ChemAxon Synergy
      • ChemAxon Synergy User Guide
        • ChemAxon Synergy User Guide for Team Members
          • Accessing Applicatons
          • Groups
          • Logging in to Chemaxon Synergy
          • Logging out of Synergy
        • Guide for Team Administrators
          • Inviting Other Users to the Team
          • Inactivating Users of the Team
          • Adding Another Team Administrator to the Team
          • Managing Groups
          • Managing Projects
          • Centrify configuration
      • ChemAxon Synergy Developer Guide
        • Application and Service Discovery
        • Application authentication
        • Application authorization
        • ChemAxon Synergy integration workshop
        • Synergy Features Catalogue
          • SF-001 Application info
          • SF-002 Healthcheck
          • SF-003 Application icon
          • SF-004 Web endpoints
          • SF-005 Logout
          • SF-006 Deep links
      • ChemAxon Synergy Administrator Guide
      • Chemaxon Synergy History of Changes
    • Document to Structure
      • Document to Structure User Guide
        • Configuring OSR tools for Document to Structure
      • Document to Structure Developer Guide
        • Code examples
          • Code
      • Document to Structure Licensing
      • Documents for Previous Releases
        • Document to Structure Developer's Guide - Document Extractor
      • Document to Structure Getting Help and Support
      • Document to Structure History of Changes
    • JChem Base
      • JChem Base Administration
        • Installation Guide
        • Administration Guide - JChem Manager
        • Multiuser Support
        • Tomcat Configuration
        • Administration Guide for Composite DB
        • Preparing and Running Batch Files and Shell Scripts
      • JChem Base Developer's Guide
        • Introduction for Java applications
        • JChem Chemical Database Concepts
        • File Import Export Tools
        • Modifying Structure Tables
        • R-group Decomposition Developer's Guide
        • Structure Searching
        • Utilities
        • JChem Base API documentation
      • JChem Base User's Guide
        • Query Guide
          • Search types
          • Similarity search
          • Query features JCB
          • Stereochemistry JCB
          • Special search types
            • R-group structures JCB
            • R-group Decomposition User's Guide
            • Searching in Markush targets tables
            • Reaction search
            • Polymer search
            • Sophisticated chemical formula search
          • Search options
            • Tautomer search - Vague bond search - sp-Hybridization
            • Search Options Guide
              • Atomproperty specific search options
              • Attached data specific search options
              • Bond specific search options
              • Chemical terms specific search options
              • Database specific search options
              • General search options
              • Hitdisplay specific search options
              • Markush structure specific search options
              • Performance specific search options
              • Polymer specific search options
              • Query feature specific search options
              • Reaction specific search options
              • Resultset specific search options
              • Similarity specific search options
              • Stereo specific search options
              • Tautomer specific search options
          • Standardization JCB
          • Hit display-coloring
          • Appendix JCB
          • Matching Query - Target Examples
        • jcsearch Command Line Tool
        • jcunique Command Line Tool
        • Homology Groups and Markush Structures
      • JChem Base FAQ
        • JCB FAQ
        • JChem Base and Cartridge Performance Information JCB
          • Environment Information of Performance Benchmark JCB
      • JChem Base History of Changes
        • JChem History of Changes from version 1.0.4 to 6.3.4
      • JChem Base Getting Help and Support
      • JChem Base Licensing
        • JChemBase EULA
        • JChem Base License Key
    • JChem Choral
      • Choral Installation and Administration
      • Choral API Usage
      • Choral FAQ and Known Issues
      • JChem Choral History of Changes
    • JChem Neo4j Cartridge
      • JChem Neo4j Cartridge History of Changes
    • JChem Oracle Cartridge
      • JChem Oracle Cartidge Administration
        • JChem Oracle Cartridge - Getting started guide
        • Installation and administration of JChem Cartridge for Oracle
      • JChem Oracle Cartridge Developer's Guide
        • JChem Cartridge for Oracle
        • Cartridge API
        • Cartridge API - Deferrred Error Handling
        • Description of parameters
        • External Java interfaces
        • Generic Molecular Descriptor Support
      • JChem Oracle Cartridge FAQ
        • JOC FAQ
        • JChem Cartridge Performance Information
          • JOC Environment Information of Performance Benchmark
      • JChem Oracle Cartridge History of Changes
      • JChem Oracle Cartridge Getting Help and Support
      • JChem Oracle Cartridge Licensing
        • JChem Oracle Cartridge EULA
    • JChem Microservices
      • Calculations Web Services
      • DB Web Services
      • IO Web Services
      • Markush Web Services
      • Structure Manipulation
      • JChem Microservices History of Changes
      • Marvin JS Web Services
    • JChem PostgreSQL Cartridge
      • Getting Started JChem PostgreSQL Cartridge
      • JChem PostgreSQL Cartridge Manual
        • Installation and Administration
        • API Usage
          • Deprecated API
        • Citus Distibuted JChem PostgreSQL Cartridge
        • JDBC Caution
      • JChem PostgreSQL Cartridge History of Changes
      • JChem PostgreSQL Cartridge Getting Help and Support
      • JChem PostgreSQL Cartridge Licensing
    • JChem Web Services Classic
    • JKlustor
      • What is JKlustor
      • Clustering methods
        • Hierarchical clustering
          • MCS search and LibMCS
            • Maximum Common Substructure (MCS) search
            • Library MCS (LibMCS) clustering
              • LibMCS GUI
            • LibMCS licensing
          • Ward clustering
        • Non-hierarchical clustering
          • Bemis-Murcko clustering
          • Diverse Set Selection
          • Jarvis-Patrick clustering
          • K-means clustering
          • Sphere Exclusion clustering
          • Comparing libraries with Compr
      • CreateView
      • JKlustor History of Changes
      • JKlustor licensing
    • Markush Tools
      • Markush Composer
      • Markush Enumeration
      • Markush Overlap
    • Marvin JS
      • Getting Started with Marvin JS
        • Create
        • Navigate on the canvas
        • Select-Move-Delete
        • Marvin JS Tips and Tricks
      • Marvin JS Installation and System Requirements
        • Browser compatibility
      • Marvin JS Developer's Guide
        • How to Embed it
        • Web services
      • Marvin JS User's Guide
        • Editor Overview
          • Editor Canvas
          • Dialogs
            • Abbreviated groups dialog
              • Default abbreviated group list in Marvin JS
            • Atom query properties dialog
            • Attached Data dialog
            • Bond properties dialog
            • Export dialog
            • Import dialog
            • Periodic table dialog
            • Atom properties dialog in Marvin JS
            • Pseudo atom dialog
            • Reaxys Group Generics dialog
            • Repeating group dialog
            • R-group dialog
            • R-logic dialog
            • Set box color dialog
            • Text dialog
            • View Settings dialog
          • Toolbars
            • Atom Toolbar - Right Toolbar
              • Frequently used atoms
              • Periodic table
              • Query Atoms
            • General Toolbar - Top Toolbar
              • Add-Remove explicit Hydrogen
              • Aromatize, dearomatize
              • Auto map
              • Calculate stereo
              • Clear
              • Cut-Copy-Paste
              • Export button
              • Import button
              • Rotate 3D
              • Structure Cleaning
              • Undo-Redo
              • View settings
              • Zoom
            • Template Toolbar - Bottom Toolar
              • Abbreviated group
              • Template
            • Tools Toolbar - Left Toolbar
              • Bond tools
              • Chain
              • Charge
              • Delete tool
              • Electron flow arrow
              • Graphical boxes
              • Radical and lone pair
              • Reaction tools
              • Repeating Group
              • R-group attachment
              • Selection MJS
              • Selection tools
              • Smart R-group
              • Text
            • Tools toolbar in Marvin JS
            • Slide toolbar buttons
          • Context menus
            • Atom Context menu
            • Bond Context menu
            • Empty Space Context menu
            • Graphical Objects Context menu
            • Abbreviated Group Context menu
            • R-group label Context Menu
            • Selection Context Menu
            • Repeating Group Context menu
        • Drawing and editing options
          • Atom
          • Atom mapping
          • Bond
          • Copy structures
          • Graphical Objects in Marvin JS
          • Radicals and Lone pairs
          • Reaction
          • Reaction Mechanism
          • R-group representation and editing options
          • Rotating in 2D
          • Snapped objects
          • Substructure elements-Templates, Abbreviations, Groups and Chains
            • Abbreviations
            • Chains
            • Groups-Link nodes
            • Groups-Repetition units
            • Structural Templates
          • Text editing
        • Feature overview pages
          • Markush Structures in Marvin JS
          • Query Structures in Marvin JS
          • Stereochemistry in Marvin JS
          • Reactions and mechanisms in Marvin JS
        • Keyboard Shortcuts in Marvin JS
      • Marvin JS API Reference
      • Online Examples
      • Marvin JS Licensing
        • Marvin JS EULA
      • Marvin JS History of Changes
      • Marvin JS FAQ
      • Marvin JS Getting Help and Support
        • Marvin JS Troubleshooting
      • Marvin JS Video Tutorials
    • Name to Structure
      • Name to Structure Developer's Guide
      • Name to Structure Format options
      • Name to Structure Getting Help and Support
      • Name to Structure History of Changes
      • Name to Structure Licensing
      • Name to Structure User's Guide
        • Custom Dictionary in Name Import
        • Custom Webservice in Name Import
    • Reactor
      • Reactor User's Guide
        • Introduction to Reactor
          • Reactor Features
        • Reactor Getting Started
          • Reactor in Step-by-Step
        • Reactor Concepts
          • Virtual Library Design
          • Smart reactions
            • Stereoselectivity
            • Regioselectivity
        • Reactor Examples
          • Simple examples
          • Multiple reactants
          • Reactivity rules
          • Reactor usage examples
          • Selectivity rules
        • Working with Reactor
          • Specifying Reactions
            • Drawing a Reaction Scheme
              • Introducing the Reaction Scheme
            • Reaction Library
          • Specifying Reactants
          • Reaction Mapping
            • Orphan atoms
            • Other reaction mapping styles
          • Reaction Rules
            • Exclude Rule
            • Reactivity Rule
            • Selectivity Rule
          • Reactant Combinations
          • Running Reactor
          • Reactor Interfaces
            • Reactor Application
              • Add reaction file
              • Specify reactants
              • Set runtime options for reaction processing
                • General options
                • Advanced options
                • Synthesis code options
                • Property Copy
              • Run the reaction and generate products in batch mode
            • Reactor Command-line Application
              • Using the react command-line interface
              • Options - react CLI
                • Reaction file - React CLI
                • Input (Reactants) - React CLI
                • Reactant processing modes - React CLI
                • Output - React CLI
                • Reaction rules - React CLI
                • Product related options
                • Reporting options
                • Mapping related options
                • Special options
                • Ratio - React CLI
                • Reverse reaction - React CLI
            • Reactor in Instant JChem
            • Reactor in JChem for Excel
              • JCReactProductStructure function
                • Prerequisites of JCReactProductStructure function
                • Insert JCReactProductStructure function
                • Populate cells with JCReactProductStructure results
                • Example on multiple product as result
              • JCReactReactionStructure function
                • Prerequisites - JCReactReactionStructure
                • Insert JCReactReactionStructure function
                • Populate cells with JCReactReactionStructure result
              • Reactor Examples inJChemforExcelUsage Reactor
            • Reactor in KNIME
              • Quick help
            • Reactor in Pipeline Pilot
            • Reactor in Plexus Suite
            • API, Web Services
            • Glossary
              • Isotopes
              • Manual selection
              • Output file format
              • Product list
              • Ratio
              • Reaction File - Reaction Equation
              • Reaction stereo
              • Reversed reaction
              • Standardization in Reactor
              • Standard Properties in the ChemAxon Reaction Library
      • Reactor FAQ
      • Reactor Licensing
      • Reactor Getting Help and Support
      • Reactor History of Changes
      • Reactor Configuration Files
    • Screen
      • Introduction to Virtual Screening
      • ScreenMD
      • Screen3D
      • Screen Developer Guide
      • Screen History of Changes
      • Screen licensing
    • Standardizer
      • Standardizer User's Guide
        • Standardizer Introduction
          • Standardizer in a Nutshell
          • Why Use Standardizer
        • Standardizer Getting Started
          • Standardization in Step-by-Step
          • Quick Help on Configuration Design
        • Standardizer Concepts
          • Action
          • Standardizer Configuration
          • Standardizing Molecules
          • Typical Workflows
        • Working with Standardizer
          • Standardizer Actions
            • Add Explicit Hydrogens
            • Alias to Atom
            • Alias to Group
            • Aromatize
            • Clean 2D
            • Clean 3D
            • Clear Isotopes
            • Clear Stereo
            • Contract S-groups
            • Convert Double Bonds
            • Convert Pi-metal Bonds
            • Convert to Enhanced Stereo
            • Create Group
            • Dearomatize
            • Disconnect Metal Atoms
            • Expand S-groups
            • Expand Stoichiometry
            • Map
            • Map Reaction
            • Mesomerize
            • Neutralize
            • Remove Absolute Stereo
            • Remove Atom Values
            • Remove Attached Data
            • Remove Explicit Hydrogens
            • Remove Fragment
            • Remove R-group Definitions
            • Remove Stereo Care Box
            • Replace Atoms
            • Set Absolute Stereo
            • Set Hydrogen Isotope Symbol
            • Strip Salts
            • Tautomerize
            • Transform
            • Ungroup S-groups
            • Unmap
            • Wedge Clean
            • Remove
            • Standardizer Transform
            • Custom Standardizer Actions
            • Remove Solvents
          • Creating a Configuration Standardizer
          • Interfaces Standardizer
            • Standardizer Application
              • Setting up Profiles
            • Standardizer Editor
            • Standardizer Command-line Application
            • Standardizer JChem Base
            • Standardizer JChem for Excel
            • Standardizer Instant JChem
            • Standardizer JChem Cartridge
            • Standardizer KNIME
            • Standardizer Pipeline Pilot
      • Standardizer Developer's Guide
      • Standardizer Installation and System Requirements
      • Standardizer Licensing
        • Standardizer EULA
      • Standardizer Getting Help and Support
      • Standardizer History of Changes
    • Structure Checker
      • Structure Checker User's Guide
        • Introduction
          • Structure Checker in a Nutshell
        • Structure Checker Getting Started
        • Structure Checker Concepts
          • Checkers StrCh
          • Fixers
          • Structure Checking of Molecules
        • Working with Structure Checker
          • Checker List
            • Abbreviated Group StrCh
            • Absent Chiral Flag
            • Absolute Stereo Configuration
            • Alias
            • Aromaticity Error
            • Atom Map
            • Atom Query Property
            • Atom Value
            • Atropisomer
            • Attached Data StrCh
            • Bond Angle
            • Bond Length
            • Brackets
            • Chiral Flag
            • Chiral Flag Error
            • Circular R-group Reference
            • Coordination System Error
            • Covalent Counterion
            • Crossed Double Bond
            • Custom Checkers and Fixers
            • Double Bond Stereo Error
            • EZ Double Bond
            • Empty Structure
            • Explicit Hydrogen
            • Explicit Lone Pairs
            • Incorrect Tetrahedral Stereo
            • Isotope
            • Metallocene Error
            • Missing Atom Map
            • Missing R-group Reference
            • Molecule Charge
            • Multicenter
            • Multicomponent
            • Multiple Stereocenter
            • Non-standard Wedge Scheme
            • Non-stereo Wedge Bond
            • OCR Error
            • Overlapping Atoms
            • Overlapping Bonds
            • Pseudo Atom
            • Query Atom
            • Query Bond
            • Racemate
            • Radical
            • Rare Element
            • R-atom
            • Reacting Center Bond Mark
            • Reaction Map Error
            • Relative Stereo
            • R-group Attachment Error
            • R-group Bridge Error
            • R-group Reference Error
            • Ring Strain Error
            • Solvent
            • Star Atom
            • Stereo Care Box
            • Stereo Inversion Retention Mark
            • Straight Double Bond
            • Substructure
            • Three Dimension 3D
            • Unbalanced Reaction
            • Unused R-group Reference
            • Valence Error
            • Valence Property
            • Wedge Error
            • Wiggly Bond
            • Wiggly Double Bond
          • Creating a Configuration StrCh
          • Interfaces StrCh
            • MarvinSketch StrCh
            • Structure Checker Application
            • Structure Checker Editor
            • Structure Checker Command Line Application
            • JChem Cartridge StrCh
      • Structure Checker Developer's Guide
        • Introduction to Structure Checker API
        • Classes, interfaces and configuration
        • Implementing a new Structure Checker
        • Create Graphical User Interface for Checker Options
        • Implementing Fixers
      • Structure Checker Installation and System Requirements
      • Structure Checker Licensing
        • Structure Checker EULA
      • Structure Checker Getting Help and Support
      • Structure Checker History of Changes
    • Structure to Name
      • Structure to Name User Guide
      • Structure to Name Developer's Guide
      • Structure to Name Format options
      • Structure to Name Licensing
      • Structure to Name Getting Help and Support
      • Structure to Name History of Changes
  • Third-party Integration
    • JChem for Office Documentation
    • KNIME Nodes
      • KNIME Nodes Administration
      • KNIME Nodes Licensing
      • KNIME Nodes Getting Help and Support
      • KNIME Nodes History of Changes
    • Pipeline Pilot Components
      • Pipeline Pilot Components Administration
      • Pipeline Pilot Components Product Presentation
      • Pipeline Pilot Components Getting Help and Support
      • Pipeline Pilot Components Licensing
      • Pipeline Pilot Components History of Changes
        • Pipeline Pilot Components History of Changes by Branches
  • Cross Product Documentation
    • ChemAxon Configuration Folder
    • Chemical Fingerprints
      • Extended Connectivity Fingerprint ECFP
      • Chemical Hashed Fingerprint
      • Pharmacophore Fingerprint PF
      • Reaction fingerprint RF
      • Fingerprint and descriptor generation - GenerateMD
      • Pharmacophore perception - PMapper
      • Chemical Fingerprints licensing
    • Chemical Terms
      • Available Functions
        • Functions by Categories
        • Functions in Alphabetic Order
      • Chemical Terms Getting Help and Support
      • Chemical Terms Getting Started
      • Chemical Terms Introduction
      • Products using Chemical Terms
        • Chemical Terms Evaluator
          • Evaluator Examples
        • Instant JChem CT
        • JChem Base CT
        • Chemical Terms - JChem Cartridge
        • Chemical Terms - JChem for Excel
        • Chemical Terms - Reactor
        • Chemical Terms - KNIME
        • Chemical Terms - Pipeline Pilot
      • The Chemical Terms Language
        • Language Elements
        • Expression Syntax
        • Predefined Functional Groups and Named Molecule Groups
        • Initial Scripts
        • Input Contexts
        • Chemical Terms Configuration
        • Examples
          • Evaluator and JChem Cartridge Examples
          • Reactor Examples CT
          • Search Filter Examples
      • Usage examples CT
        • Basic Calculations
        • Search Filters
        • Reaction Processing
        • Markush Enumeration CT
    • File Formats
      • Basic export options
      • Compression and Encoding
        • Base64
        • GZIP
      • Document formats
        • Marvin Documents - MRV
          • MRV Export Options
          • Schema and Validation
        • ISISDraw sketch file - SKC
          • Features imported from SKC files
          • Features exported to SKC format
        • ChemDraw sketch file - CDX, CDXML
          • Features imported from CDX and CDXML files
          • Features exported to CDX
      • Graphics Formats
        • Image Export in Marvin
          • JPEG
          • BMP
          • PNG
          • EMF
          • PDF
          • SVG
          • TIFF
          • EPS
        • Export to POV-Ray
        • Image Import in Marvin
      • Molecule file conversion with Molconverter
      • Molecule Formats
        • CML
          • CML Export Options
        • MDL MOL files
          • MDL MOLfiles, RGfiles, SDfiles, Rxnfiles, RDfiles formats
          • Chemaxon specific information in MDL MOL files
          • MOL file compression
          • MDL MOL Import and Export Options
          • Default valence of metal atoms
        • Daylight SMILES related formats
          • SMILES
          • SMARTS
          • SMILES and SMARTS import and export options
        • ChemAxon SMILES extensions
          • ChemAxon Extended SMILES and SMARTS - CXSMILES and CXSMARTS
          • CXSMILES and CXSMARTS import and export options
          • ChemAxon SMILES Abbreviated Group
        • IUPAC InChI, InChIKey, RInChI and RInChIKey
          • InChi and InChiKey export options
        • Name
        • Sequences - peptide, DNA, RNA
          • Peptide import and export options
        • FASTA file format
          • FASTA import options
        • Protein Data Bank (PDB) file format
          • Standard PDB residues
          • PDB import and export options
        • Tripos SYBYL MOL and MOL2 formats
          • Tripos Mol2 format
          • Tripos SYBYL MOL format
        • XYZ format
          • XYZ import and export options
        • Gaussian related file formats
          • Gaussian Cube format
          • Gaussian Cube import and export options
          • Gaussian input-output format
        • Markush DARC format - VMN
          • VMN peptide import option
        • CSV
    • Input and Output System
      • Supported formats
      • Input and Output System - Import
      • Input and Output System - Export
      • Image generation
      • Importing and Exporting molecule properties
      • Molecule converter
      • Integrating your own format
    • License Management
      • License Installation
        • Installing to desktops
        • Installing to servers
        • Licensing Applets
        • Licensing via Java Web Start
        • Setting environment variables
      • License Management FAQ
      • About ChemAxon Licensing
      • Licensing prior version 5.0
      • License Report
      • Merging Licenses
      • EULA
    • Long Term Supported Releases - LTS
      • LTS Release
      • LTS Release Versions
      • Documentation - LTS release
    • Notice about CAS Registry Numbers®
    • Other versions
    • Public Repository
    • Scientific Background
      • Aromatization
        • Methods
        • Differences between the Basic and General aromatization methods
        • Aromatization of query structures
        • Dearomatization
      • Stereochemistry
        • Parity
        • Tetrahedral Stereo
        • Cis-trans stereo
        • Axial stereoisomerism - atropisomerism
      • Valence Calculations
        • Alkali metals and Hydrogen
        • Alkaline earth metals
        • Transition metals, Lanthanoids and Actinoids
        • Boron group
        • Carbon group
        • Nitrogen group
        • Oxygen group
        • Halogens
        • Noble gases
        • Aromatic systems
        • Special cases - abbreviations query properties
    • Structure Representation
      • Structure Representation - Class Representation
        • MolAtom
        • MolBond
        • Molecule Graph
        • R-group structures
          • Implementation
        • Representation of reactions
        • S-groups
        • Examples for Molecule representation
      • Aromaticity
        • Converting structure from Kekule form to aromatic form
        • Differences between the basic and general methods
        • Converting structure from aromatic form to Kekule form
      • Implicit, Explicit and Query Hydrogens
        • Converting explicit Hydrogens to implicit
        • Converting implicit Hydrogens to explicit
        • Query Hydrogens
      • Assigning stereochemistry descriptors
        • CIP Stereo chemistry
        • Stereoisomers around double bonds
          • Cis Trans stereoisomers in 0 Dimension
          • Cis Trans stereoisomers in 2 or 3 Dimensions
          • EZ stereoisomers
        • Parity information
          • Parity information in 0 Dimension
          • Parity information in 2 or 3 Dimensions
        • Chirality
      • Cleaning options
      • Deprecated and Removed Methods
        • All of the Deprecated and Removed Methods
        • Methods Deprecated or Removed in version 14.7.7.0
        • Methods Deprecated or Removed in version 6.3
        • Methods Deprecated or Removed in version 6.2
        • Methods Deprecated or Removed in version 6.1
      • Relative configuration of tetrahedral stereo centers
      • Iterator Factory
      • Atom and bond-set handling
      • Graphic object handling
    • Supported Java Versions
  • Legal
    • Legal Documents
      • Cookie Policy
      • End User License Agreement
      • End User Subscription Agreement - EUSA
      • Personal Data Management - General
      • Personal Data Management - Newsletter Subscriptions
      • Privacy Policy
      • Privacy Policy for ChemAxon SaaS
      • Privacy Policy for ChemAxon Synergy
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    • White Papers
      • Chemicalize Security White Paper
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  • Discontinued Products
    • Document to Database
      • Document to Database Administration Guide
      • Document to Database System Requirements
      • Document to Database Licensing
      • Document to Database Getting Help and Support
      • Document to Database History of Changes
    • Fragmenter
    • MarvinSpace
      • MarvinSpace User's Guide
        • What is MarvinSpace
        • MarvinSpace GUI Overview
          • Canvas - MarvinSpace
          • Menu bar
            • File Menu
            • Edit Menu
            • Display Menu
              • Draw Type Submenu
              • Color Type Submenu
              • Quality Submenu
              • Depth Cue menu item
              • Anti-alias menu item
              • Options Menu
                • Visualizers Tab
                • Surface Tab
                • Secondary Structure Tab
                • Colors Tab
                • Controls Tab
            • Show Menu
              • Labels submenu
              • Surface submenu
              • Secondary Structure menu item
            • Animation Menu
            • Help Menu
          • Pop-up menu
          • Toolbar
            • Controls
            • Monitors
            • Pharmacophore models
            • Display tools
          • Selection Panel
        • How to use MarvinSpace features
        • MarvinSpace Operations
      • MarvinSpace Developer's Guide
        • MarvinSpace parameters
          • Scene parameters
          • Action parameters
          • Ligand parameters
          • Macromolecular parameters
          • Water parameters
          • Ion parameters
          • Pharmacophore parameters
          • Surface parameters
          • Secondary Structure parameters
        • Step-by-step example - displaying atom properties
        • Step-by-step code examples
        • Surface coloring in MarvinSpace
      • MarvinSpace History of Changes
    • Metabolizer