Chemical Toolbar

    This toolbar contains chemical functions and it is not visible by default.

    To make it visible, choose View > Toolbars > Chemical.

    Toolbar item Icon Description
    Clean and Arrange in 2D images/download/attachments/1805497/Marvin_new_clean_2D_24.png Cleans structures and positions them to the center of the canvas.
    Clean 2D images/download/thumbnails/1805497/clean2D24.png Calculates new 2D coordinates for the molecule.
    Clean 3D images/download/thumbnails/1805497/clean3D24.png Calculates new 3D coordinates for the molecule. Clean3D builds up conformers of fragments from which the best, that is, the lowest energy conformer is given back. The quality of the structures is measured by a simple energy function (Dreiding-type molecular mechanics).
    Convert to Aromatic Form images/download/thumbnails/1805497/aromatize24.png Transforms the molecule to aromatic representation using the transformation method set.
    Convert to Kekulé Form images/download/thumbnails/1805497/dearomatize24.png Transforms the molecule to non-aromatic representation.