| .H+ | Increases the number of  total hydrogens  (total number of hydrogen substituents). | 
| .H- | Decreases the number of  total hydrogens  (total number of hydrogen substituents). | 
| .v+ | Increases the number of  valence  (total bond order). | 
| .v- | Decreases the number of  valence  (total bond order). | 
| .X+ | Increases the number of  connections  (number of substituents including hydrogens). | 
| .X- | Decreases the number of  connections  (number of substituents including hydrogens). | 
| .R- | Increases the number of  rings  (number of rings the atom is a member of). | 
| .R+ | Decreases the number of  rings  (number of rings the atom is a member of). | 
| .r+ | Increases the  smallest ring size  (size of the smallest ring the atom is a member of). | 
| .r- | Decreases the  smallest ring size  (size of the smallest ring the atom is a member of). | 
| .rb+ | Increases  ring bond count  (number of ring bonds next to the atom). | 
| .rb- | Decreases  ring bond count  (number of ring bonds next to the atom). | 
| .s+ | Increases  substitution count  (number of non-hydrogen and isotopic hydrogen substituents). | 
| .s- | Decreases  substitution count  (number of non-hydrogen and isotopic hydrogen substituents). | 
| .h+ | Increases the number of  implicit hydrogens  (number of implicit hydrogen substituents). | 
| .h- | Decreases the number of  implicit hydrogens  (number of implicit hydrogen substituents). | 
| .D+ | Increases  degree  (equivalent to substitution count: number of non-hydrogen and isotopic hydrogen substituents). | 
| .D- | Decreases  degree  (equivalent to substitution count: number of non-hydrogen and isotopic hydrogen substituents). | 
| .u | Marks as an  unsaturated atom  (atom has double, triple or aromatic bond). | 
| .a/A | Marks as  aromatic/aliphatic  (has aromatic bond). |