Overlapping Bonds

• Checker searches for overlapping bonds: bonds crossing each other or bonds closer to each other than the set minimal value.

• Fixer offers cleaning the structure by:

  1. 2D clean or (clean);

  2. partial clean (partialclean).

  Example :

  Overlapping Bonds Checker (overlappingBonds)	Warning:	Fix
  		Clean (clean)
  Detect Overlapping Bonds	ex_overlappingbonds_ch	ex_overlappingbonds_f

  Note : Bridged polycycles are cleaned as far as their structure allows it, and the overlapping bonds warning will remain.