Lithium LTS
  • Standalone Applications
    • BioEddie
      • BioEddie Developer's Guide
      • BioEddie User's Guide
        • BioEddie Interface Overview
          • Toolbar of BioEddie
          • Monomer Library Panel
          • Dialogues
        • Working in the Editor
          • Import to BioEddie
          • Editing molecules in BioEddie
            • Selection of molecule parts
            • Create a bond
            • Deleting molecule parts
            • Add - Insert - Replace - Delete a monomer
            • Moving molecules on the canvas
            • Clean
            • Zooming
            • Editing domains
          • Annotations
          • Monomer Library
            • Load library
            • Grouping monomers
            • Library Manager
        • Saving a structure
        • Replace tool
      • BioEddie System Requirements
      • BioEddie Licensing
      • BioEddie Getting Help and Support
      • BioEddie History of Changes
    • Chemaxon Assay
      • User guide for Assay
        • Processed data upload
        • Template File Usage
      • Administration guide for Assay
      • Assay Release Notes
        • Manual for Migration from Procedure to Protocol
    • ChemCurator
      • ChemCurator Getting Help and Support
      • ChemCurator History of Changes
      • ChemCurator Installation and System Requirements
      • ChemCurator Licensing
      • ChemCurator User's Guide
      • Command-Line Mode
      • Integration Server Administrator Guide
    • ChemLocator
      • ChemLocator Installation
        • Hardware Requirements
        • Software requirements
        • Prerequisites: Docker
        • Prerequisites: Azure AD
        • Installation Guide
        • Uninstallation
      • ChemLocator Configuration
        • First-time configuration
        • Indexing
      • ChemLocator Upgrade
      • ChemLocator Overview
        • File Formats
      • ChemLocator Search
        • Supported Browsers
      • ChemLocator Migration
      • How To
      • Troubleshoot
      • Changelog
    • cHemTS
      • User Guide - cHemTS
        • Login in Compliance Checker
        • Single Check
        • File check
      • Admin Guide - cHemTS
        • Install Guide - cHemTS
          • System Requirements - cHemTS
          • Installing - cHemTS
        • Configuring cHemTS
        • Administration GUI - cHemTS
        • Integration API
      • cHemTS Getting Help and Support
      • cHemTS History of Changes
        • cHemTS - Software
        • cHemTS - Knowledge Base
    • Compliance Checker
      • User Guide - Compliance Checker
        • Login in Compliance Checker
        • Single Check
        • File check
      • Admin Guide - Compliance Checker
        • Install Guide - Compliance Checker
          • System Requirements - Compliance Checker
          • Installing Compliance Checker
        • Configuring Compliance Checker
        • Administration GUI
          • Login as Administrator
          • Update the regulations
          • System monitor
          • Category group editor
          • User-defined category editor
          • History
            • Database update history
            • File check history
            • Single check history
          • Report template editor
        • Integration API
        • Workflow tools
      • Compliance Checker Getting Help and Support
      • Compliance Checker History of Changes
        • Compliance Checker - Software
        • Compliance Checker - Knowledge Base
      • Try out!
    • Compound Registration
      • Quick Start Guide
        • Register a new compound
        • Register a new lot
        • Register a new compound reviewing matches
        • Dealing with failed submissions
        • Register compounds without structures
      • Compound Registration User's Guide
        • Overview
        • Compound Registration Abbreviations
        • Definitions of Terms
        • Compound Registration Introduction
        • Login
        • Dashboard page
        • Autoregistration
          • Registration page
          • Register a Virtual Compound
        • Bulk Upload
          • Upload compounds
            • Upload summary page
          • Upload salts and solvates
        • Advanced Registration
          • Register from the Registration page
          • Registering from the Submission page
            • Registering new structures
            • Registering matching structures
            • Possible status messages - how to register
          • Staging area
            • Actions in the Staging area
            • Workspace
            • Status message
            • Structure area
            • Data fields
            • Card
        • Search
          • Structure search option
            • Type of search
            • Match type
            • Search query
          • Bulk edit of additional data
          • Download
        • User Profile
        • Browse page
          • Browser
          • Browse-card
          • Parent level amendment
          • Version level amendment
          • Lot level amendment
        • Appendix A. Calculations
        • Appendix B. Markush Structures
        • Multi-Component compounds
        • Restricted compounds
      • Configuration Guide
        • Administration page
          • Access Control
            • Users and groups
            • Groups and roles
            • Project based access
            • Authentication Providers
          • Forms and Fields
            • Form Editor
            • Dictionary Manager
          • Chemistry
          • Chemical structures
          • General settings
          • Workflow
          • Integration
          • Tools
          • Notifications
          • Pages Configuration
          • Navigation
        • Authentication
        • Database Connections
        • E-mail Server and User Repository
        • Message Queues
      • Deployment Guide
        • Compound Registration Installation requirements
        • Database setup
        • Deploying the application
        • Install through the wizard
        • Upgrade guide
        • Command Line Tools
      • Compound Registration FAQ
      • Compound Registration System Requirements
      • Compound Registration History of Changes
      • API documentation
    • Instant JChem
      • Instant Jchem User Guide
        • Getting Started
          • About Instant JChem
          • Additional Help Material
          • Instant JChem Terminology
          • How the Instant JChem items fit together
          • Windows Menus and Toolbars
          • Instant JChem Quick Start
          • User Settings
          • Licenses
          • Instant JChem Dictionary
        • IJC Projects
          • About Projects
          • Creating a new project
          • Shared Projects
        • IJC Schemas
          • About IJC Schemas
          • Adding a New Schema
          • Connecting to an existing IJC schema
          • Logging in to an IJC schema
          • Editing Schema Connection Settings
          • Deleting a schema
          • Backing up and restoring schemas
        • Viewing and Managing Data
          • Viewing Data
            • Multiple Data Result Set
            • Viewing multi-entity data
          • Form View
            • Design Mode
            • Browse Mode
            • Query Mode
          • Grid View in Instant JChem
          • Grid View from Selection
          • Form Widgets
            • Standard Widgets
              • TextField Widget
              • TextArea Widget
              • Button Widget
              • Label Widget
              • CheckBox Widget
              • Date Widget
              • List Widget
              • Browser Widget
              • Table Widget
              • Multi Field Sheet Widget
              • MolPane Widget
              • Structure Matrix Widget
              • TreeTable Widget
              • Canvas Widget
            • Visualisation Widgets
              • Histogram Widget
              • Scatter Plot Widgets
              • Radar Chart Widget
              • Box Plot Widget
            • Container Widgets
              • Panel Widget
              • Tabbed Panel Widget
          • Conditional Formatting
            • Step by Step guide
            • Creating Templates
          • Copying views
          • Adding and Deleting Rows
            • Editing Multiple Values
          • Printing
          • Renderers
          • Pivoting in IJC
        • Lists and Queries
          • Running Queries
            • Query Overview
            • Query Builder
            • Building Queries
            • Executing Queries
            • Form Based Query
            • Federated Search
          • List and Query Management
          • Cherry Picking
        • Collaboration
          • Sharing Items
          • Instant JChem URLs
        • Import and Export
          • Using File Import
          • RDF File Import
          • Merging Data
          • Exporting Data
        • Editing Databases
          • About Primary Keys
          • Controlling Editability
          • Editing Schemas
            • Editing Data Trees
            • Editing Entities
            • Editing Existing Schemas
            • Editing Fields
              • Calculated Fields
              • Extension Fields
              • Pick list
              • URL Fields
              • Standard Fields
            • Editing Relationships
          • Schema Editor
          • Structure Views
          • Using Multiple Database Schemas
        • Relational Data
          • About Relationships
          • About Data Trees
          • Editing Child Data
        • Chemical Calculations and Predictions
          • About Chemical Calculations and Predictions
          • Adding Chemical Terms Fields
        • Chemistry Functions
          • Performing an Overlap Analysis
          • Standardizer - Standardizing Structure Files
          • Markush Enumeration in IJC
          • Reaction Enumeration
          • R-group analysis
        • Security
          • About Instant JChem Security
          • Changing Security Settings
          • Managing User Database
          • Managing Current Users
          • Security Templates
          • Row level security
          • Using database authentication
          • Oracle JDBC connection encryption
          • Upgrade to Spring Security 5 framework
        • Scripting
        • Updating Instant JChem
          • About Updating Instant JChem
          • About Managing Plugins
          • Updating IJC
          • Managing IJC Update Centers
          • Installing Plugins Offline
          • Updating a Multi-User IJC Installation
          • Activating and Deactivating a Plugin
            • Plugin Manager - Downloaded
            • Plugins Manager - Available Plugins
            • Plugins Manager - Installed
            • Plugins Manager - Settings
            • Plugins Manager - Updates
        • Tips and Tricks
          • Memory Usage
          • Performance Tips
          • Database Implementation Notes
          • Using the database explorer
          • Change standardizer configuration for JChem table
          • Setting up cartridge tables for use in IJC
          • Triggers and sequences
            • Triggers and sequences - Derby
            • Triggers and sequences - MySQL
            • Triggers and sequences - Oracle
        • Instant JChem Tutorials
          • Building a relational form from scratch
          • Building more complex relational data models
          • Defining a security policy
          • Filtering items using roles
          • Lists and Queries management
          • Query building tutorial
          • Reaction enumeration analysis and visualization
          • SD file import basic visualization and overlap analysis
          • Using Import map and merge
          • Using Standardizer to your advantage
          • Pivoting tutorial
      • Instant JChem Administrator Guide
        • Admin Tool
          • Admin Tool connection
          • Clone operation
          • Finish Wizard
          • Migrate operation
          • Delete operation
          • Schema security operation
          • Unlock operation
          • Change owner operation
          • Create JWS files operation
          • Short Descriptions
            • ChangeOwnerShort
            • CloneShort
            • CreateSharedShort
            • DeleteShort
            • MigrateShort
            • RenameShort
            • SecurityShort
            • UnlockShort
          • Create *.ijs file for schema(s)
        • IJC Deployment Guide
        • Supported databases
        • JChem Cartridge
        • Using Oracle Text in Instant JChem
        • Deployment via Java Web Start
        • Startup Options
        • Shared project configuration
        • Accessing data with URLs
        • Instant JChem Meta Data Tables
        • Test to Production Metadata Migrator
        • Filtering Items
        • Deploying the IJC OData extension into Spotfire
        • Reporting a Problem
        • Manual Instant JChem schema admin functions
        • SQL Scripts for Manual Schema Upgrade
        • Database Row Level Security
        • JccWithIJC
      • Instant JChem Developer Guide
        • Working With IJC Architecture
        • IJC API
        • Groovy Scripting
          • Good Practices
          • Schema and DataTree Scripts
            • Simple SDF Exporter
            • Relational SDF Exporter
            • CDX File Importer
            • Data Merger or Inserter from an SDF file
            • Markush DCR Structures Exporter
            • Select Representative Member of Clusters
            • Table Standardizer
            • Populate a Table with Microspecies
            • Create a Diverse Subset
            • Pearson Linear Correlation Co-efficient Calculator
            • PDF Trawler
            • Simple Substructure Search
            • Intersecting Sets
            • Find Entries with Duplicated Field Value
            • Importing Multiple SDF Files
            • Calling External Tools
            • Create Relational Data Tree
          • Forms Model Scripts
            • Create New Form
            • Create New Grid
            • Create New Panel
            • Create New Tabbed Pane
            • Copy Existing Form
            • Canvas Widget Scripts
          • Button Scripts
            • Execute Permanent Query
            • Patent Fetcher Button
            • Batch Searching Button
            • Import or Export a Saved Query SDF Button
            • Back and Next Buttons
            • Add Annotations Button
            • Simple Structure Checker Button
            • Advanced Structure Checker Button
            • Calculate MolWeight and generate SMILES
            • Get Current User
            • Simple ChemicalTerms evaluator
            • Edit Molecule Button
            • TanimotoMultiple
            • Execute Permanent Query Based On Its Name
            • Open existing view in the same dataTree
            • Export selection to file
            • Generate random resultset from actual resultset
          • Form Scripts
            • Drop Down Input Dialog
            • Log user and date upon row addition
            • Scripting hooks
          • Groovy Scriptlets
            • Buttons vs Scripts
            • Creating New Entities
            • Creating New Fields
            • Reading Molecules From a File
            • Insert or Update a Row
            • Evaluator
            • Create or Find a Relationship
            • Adding an Edge to a Data Tree
            • Exporting Data to a File
            • Connect to an External Database
            • Create a New ChemTerm Field
            • Create a New Dynamic URL Field
            • Create a New Static URL Field
        • Java Plugins
          • IJC Plugin Quick Start
          • IJC Hello World Plugin
          • IJC Plugin tutorial - MyAddField plugin
          • IJC Plugin tutorial - MyMathCalc plugin
          • IJC Plugin tutorial - Renderer Example
          • IJC Plugin tutorial - MySCServer webapp
          • IJC Plugin tutorial - MySCClient plugin
          • IJC Plugin tutorial - Canvas widget
          • Java Plugins and Java Web Start
      • Instant JChem FAQ
      • Instant JChem Installation and Upgrade
        • Installation on Windows
        • Installation on Mac OS X
        • Installation on Linux or Solaris
        • Installation on Other Platforms
        • Uninstall
        • Changing Java Version
      • New Features
        • New Features in IJC Q4 2020
        • New Features in IJC Q3 2020
        • New Features in IJC Q2 2020
        • New Features in IJC Q1 2020
        • New Features in IJC Q4 2019
        • New Features in IJC Q3 2019
        • New Features in IJC Q2 2019
        • New Features in IJC Q1 2019
        • New Features in IJC Q4 2018
        • New Features in IJC Q3 2018
        • New Features in IJC Q2 2018
        • New Features in IJC Q1 2018
        • New Features in IJC Q4 2017
        • New Features in IJC Q3 2017
        • New Features in IJC Q2 2017
        • New Features in IJC Q1 2017
        • New Features in IJC Q4 2016
        • New Features in IJC Q3 2016
        • New Features in IJC Q2 2016
        • New Features in IJC Q1 2016
        • New Features in IJC Q4 2015
        • New Features in IJC Q3 2015
        • New Features in IJC Q2 2015
        • New Features in IJC Q1 2015
      • Instant JChem Licensing
      • IJC Getting Help and Support
      • Instant JChem System Requirements
      • Instant JChem History of Changes
    • Markush Editor
      • Markush Editor Help and Support
      • Markush Editor History of Changes
      • Markush Editor Installation and System Requirements
      • Markush Editor Licensing
      • Markush Editor User's Guide
    • Design Hub
      • History of changes
      • Install guide
      • Configuration guide
      • Plugin Catalogue
      • Developer guide - REST API
      • Developer guide - resolver plugins
      • Developer guide - real time plugins
      • Developer guide - real time plugin templates
      • Developer guide - export plugins
      • Developer guide - storage plugins
      • Developer guide - company support plugins
      • Developer guide - registry plugins
      • Developer guide - theme customization
      • Install guide - Kubernetes
    • Marvin Desktop Suite
      • MarvinSketch
        • User Guide
          • Getting Started
          • Graphical User Interface
            • Canvas
            • Menus
              • File Menu
              • Edit Menu
              • View Menu
              • Insert Menu
              • Atom Menu
              • Bond Menu
              • Structure Menu
              • Calculations Menu
              • Services Menu
              • Help Menu
            • Toolbars
              • General Toolbar
              • Tools Toolbar
              • Atoms Toolbar
              • Simple Templates Toolbar
              • Advanced Templates Toolbar
              • Search Online Toolbar
              • Special Toolbars
            • Context Menus
            • The Status Bar
            • Dialogs
              • Multipage Settings
              • Document Style
              • Template Library Manager
              • Edit Source
              • Customize
              • Where Are the Settings Stored
              • Format Dialog
              • Periodic Table
              • Preferences
              • Create Group Dialog
              • Attach Data
              • Edit Properties
              • About
            • Shortcuts
            • Customizing the GUI
            • Configurations
            • Services Module
              • Set Services
              • Settings of the Different Service Types
                • Local
                • HTTP Service
                • SOAP Service
          • Working in MarvinSketch
            • Structure Display Options
              • Customizing Structure Drawing Styles
                • Drawing Settings
                • Drawing Styles
              • Structure Display
              • Color Schemes
              • Display Options for Implicit and Explicit Hydrogens
              • Displaying the Label of Carbon Atoms
              • Error Highlighting
              • Saving Display Options
            • Basic Editing
              • Selecting a Structure
              • Copy-Paste and DragandDrop
              • Geometric Transformation of Structures and Objects
                • Moving and Rotating
                • Scaling
                • Flipping
                • Mirroring
                • Inverting
              • Cleaning
              • Deleting a Structure
              • Editing the Source
            • Drawing Simple Structures
              • Draw Atoms
              • Draw Bonds
              • Draw Chains
              • Sprouting
              • Merge Structures
              • Templates
              • Draw Stereocenters
              • Draw Coordination Compounds
              • Insert-Edit New Structure or Fragment
              • Atom Label Editor
            • Drawing More Complex Structures
              • Substructure Groups
                • Abbreviated (Superatom) Groups
                • Polymers
                  • Draw Polymers
                  • Structure-based Representation of Polymers
                    • Structural Repeating Unit (SRU) Polymers
                    • Repeating Units with Repetition Ranges - Frequency Variation
                    • Copolymers
                  • Source-based Representation of Polymers
                • Unordered Mixtures and Ordered Mixtures
                • Charge of the Group
              • Markush Structures
                • R-groups
                • Atom Lists and NOT Lists
                • Position Variation
                • Homology Groups
                • Frequency Variation
                  • Repeating Units with Repetition Range
                  • Draw Link Nodes
              • Biomolecules
              • Atom, Bond, and Molecule Properties
            • Drawing Reactions
              • Creating Reactions
              • Mapping Reactions
              • Electron Flow Arrows
            • Using Integrated Calculations
            • Graphical Objects
              • Adding, Editing and Formatting Text
              • Drawing Shapes
            • Import and Export Options
              • Opening a Molecule File
              • Saving a Molecule File
              • Exporting to Image
            • Multipage Documents
              • Creating a Multipage Document
              • Navigating in Multipage Documents
            • Printing
          • Chemical Features
            • Valence Check
            • Structure Checker
            • Charges, Isotopes, Radicals
              • Charges
              • Isotopes
                • Isotope List Editing
              • Radicals
            • Stereochemistry
            • Reaction Schemes
            • Abbreviated Groups - Superatom Group
            • Query Features
              • R-groups
              • Link Nodes
              • Atom List and NOT List
              • Atom Properties
              • Generic Query Atom
              • Homology Group
            • Attached Data
            • Calculations
              • Analysis Box
              • Calculator Plugins in MarvinSketch
          • Marvin OLE User Guide
            • Install and Uninstall
            • How to Use
            • Customizing Marvin OLE Editing Mode
            • Redirecting Other Vendors' OLE Objects to Marvin OLE
            • Logging
            • Troubleshooting and Administration
            • Known Issues
          • Appendix
            • Customizing
            • Trademarks
          • Tutorials
        • Developer Guide
          • Customizing the GUI - Server Side
            • Customizing the GUI
            • Customizing the GUI - Assign New Action
            • Clipboard Formats Configuration
            • Configure the Attach Data Dialog
          • Parameters and Events
            • Parameters
              • JavaBeans parameters
                • Display Parameters
                  • Structure Templates
                  • Query Properties in Molecule File Formats
                • Structure Display Parameters
                • Structure Parameters
                • Other Parameters
            • Events Fired by JavaBean
              • Action Events
              • Property Change Events
          • Marvin Beans for Java
            • Marvin Beans API Documentation
            • Marvin Beans Examples
              • Examples
                • Simple Bean
                • Images
                • Structure Display Parameters
                • Structure Templates
                • Text Box Example
                  • JFileChooser Example
              • Examples
                • Simple Bean Example
                • JTable Example
                • Table View Example
                • Table View Example with Parameters
                • JFileChooser Example
                • Image Generation Using Marvin Beans
                • Excel Sheet Generation Using Marvin Beans
                • Installation Guide to jnlp Examples
            • Marvin Beans Frequently Asked Questions
          • Marvin Services
            • Manage Marvin Services
            • Service Implementations
              • Local Services
              • WSDL SOAP RPC Services
              • XML-RPC
              • JSON-RPC
              • HTTP
              • cxcalc integration
              • Chemical Terms Integration
              • Instant JChem Integration
              • JChem For Excel Integration
            • Configuration of Services
            • Calling Services
            • Viewing the Results
          • Java Web Start
        • MarvinSketch Application Options
          • Java VM Options in MarvinSketch
          • Running the Applications
      • MarvinView
        • User Guide
          • Getting started
          • How to Use MarvinView Features
            • Importing and Exporting Molecules
            • Editing Molecules
            • Structure Display Options
            • Manipulating the Molecule
            • How to Work with Multipage Molecular Documents
          • Graphical User Interface
            • Dialogs
              • Preferences Dialog
                • Display
                • Bonds
                • Structure Tab
                • Checkers Tab
                • Services Tab
                • Save-Load Tab
              • Edit Source Dialog
              • Table Options
              • About
            • Menus
              • File Menu
              • Edit Menu
              • View Menu
              • Table Menu
              • Structure Menu
              • Tools Menu
              • Pages
              • Help Menu
        • Developer's Guide
          • JavaBeans Parameters
            • Display Parameters
            • Structure Display Parameters
            • Structure Parameters
            • 3D and Animation
              • RasMol Scripts
            • Molecule Tables
              • The layout Parameter
              • The param Parameter
              • The celli and celli_j parameters
              • Table View
            • Other Parameters
          • Events Fired by the JavaBean
          • Troubleshooting - MView and JMView Tables
        • Application Options
          • Options
            • Java VM Options
            • Property Colors
      • Marvin Desktop Suite Installation and Upgrade
      • Marvin Desktop Suite History of Changes
      • Marvin Desktop Suite Licensing
    • Molconvert
    • Plexus Connect
      • Plexus Connect - Quick Start Guide
      • Plexus Connect - User Guide
        • Plexus Connect - Log in
        • Plexus Connect - Dashboard
        • Plexus Connect - Exporting Your Data
        • Plexus Connect - Export Templates
        • Plexus Connect - Browsing in Your Data Set
        • Plexus Connect - Selecting Data
        • Plexus Connect - Searching in Your Database
          • Plexus Connect - Structure Search
        • Plexus Connect - Saved Queries
        • Plexus Connect - List Management
        • Plexus Connect - Sorting Data
        • Plexus Connect - Sharing Data with Other Users
        • Plexus Connect - Charts View
        • Plexus Connect - R-group Decomposition
      • Plexus Connect - Administrator Guide
        • Plexus Connect - Authentication
        • Plexus Connect - Sharing Schema Items Among Users
        • Plexus Connect - Business Flags
        • Plexus Connect - Row-level Security
        • Plexus Connect - Shared data sources
        • Plexus Connect - Plexus storage
        • Plexus Connect - Configuration Files
        • Plexus Connect - Simple table
        • Plexus Connect - Getting the Plexus Backend and Frontend Log Files
        • Plexus Connect - Form Editor
        • Plexus Connect - Scripting
          • Plexus Connect - Python Scripting
            • Plexus Connect - Jupyter Example of usage
          • Plexus Connect - JavaScript Scripting
        • Plexus Connect - API keys
        • Plexus Connect - Deploying Spotfire Middle Tier solution
      • Plexus Connect - Installation and System Requirements
      • Plexus Connect - Licensing
        • Plexus Connect - About Chemaxon Licensing
        • Plexus Connect - End User License Agreement (EULA)
        • Plexus Connect - Installing Licenses
        • Plexus Connect - Merging License Files
        • Plexus Connect - Frequently Asked Questions about Licensing
        • Plexus Connect - License Report
      • Plexus Connect - Getting Help and Support
        • Plexus Connect - Troubleshooting for Plexus Connect
      • Plexus Connect - FAQ
      • Plexus Connect - Privacy Policy
      • Plexus Connect - Terms of Use for the Demo Site
      • Plexus Connect - History of Changes
      • Plexus Connect - Schema Refresh Without Restart
    • Zosimos
      • Zosimos User's Guide
        • Technical Information
        • LMS Integration Guides
        • Chemistry exercise types
        • Quick Start Guide for Teachers
        • Quick Start Example Content Library for Teachers
        • Quick Start Guide for Teachers with an LMS
        • Quick Start Guide for Students
        • Content Developer Guide
        • Videos
        • Frequently Asked Questions
      • Getting Help and Support
      • What's New
    • Trainer Engine
      • Introduction
      • Installation
      • User Guide
      • Configuration
      • History of Changes
      • Known Issues
      • Getting help & support
  • Toolkits and Components
    • AutoMapper
      • AutoMapper User's Guide
    • Calculator Plugins
      • Introduction to Calculator Plugins
      • Calculator Plugins User's Guide
        • Physico-chemical plugins
          • pKa Plugin
          • Major Microspecies Plugin
          • Isoelectric Point Plugin
          • logP Plugin
          • logD Plugin
          • HLB Predictor
          • Solubility Predictor
          • NMR Predictor
          • Tautomer Generation Plugin
          • Stereoisomer Generator Plugin
          • Stereo Analysis - calculating stereo descriptors
          • CNS MPO Score Predictor
          • hERG Predictor
        • Molecular modeling plugins
          • Charge Plugin
          • Orbital Electronegativity Plugin
          • Polarizability Plugin
          • Dipole Moment Calculation Plugin
          • Conformer Plugin
          • 3D Alignment Plugin
          • Molecular Dynamics Plugin
        • Structural property plugins
          • Elemental Analysis Plugin
          • Topological Analysis Plugin
          • Geometrical Descriptors Plugin
          • Polar Surface Area Plugin 2D
          • Molecular Surface Area Plugin 3D
          • Structural Frameworks Plugin
          • Hydrogen Bond Donor Acceptor Plugin
          • Huckel Analysis Plugin
          • Refractivity Plugin
          • Resonance Plugin
        • Markush Enumerator Plugin
          • Markush features
            • R groups
            • Atom lists
            • Bond lists
            • Link nodes CP
            • Repeating units
            • Position variation bonds
            • Homology Groups CP
          • Markush functionalities
            • Sequential enumeration
            • Selected part enumeration
            • Calculate library size
            • Random enumeration
            • Valence filter
            • Homology group enumeration
            • Scaffold alignment and coloring
            • Markush code generation
        • Training the Calculator Plugins
          • cxtrain command line tool
          • Training the logD Plugin
          • Training the logP Plugin
          • Training the pKa Plugin
        • cxcalc command line tool
          • cxcalc calculator functions
      • Calculator Plugins Developer's Guide
        • Calculator Plugins Web Services
        • Concurrent plugin API usage
        • Custom Calculator Plugin implementation
        • Integration of third-party calculations into Marvin and JChem
        • Introduction to developers
        • Plugin API usage examples
        • Using Calculator Plugins via API
      • Calculators on AWS Marketplace
        • Getting started
        • Pricing
        • Developer's guide
      • Background materials
        • Calculation of partial charge distribution
        • Generate3D
        • Isoelectric point (pI) calculation
        • LogP and logD calculations
        • NMR model prediction
        • pKa calculation
        • Red and blue representation of pKa values
        • Tautomerization and tautomers
        • Validation results
        • Tautomerization and tautomer models of Chemaxon
        • Theory of aqueous solubility prediction
        • The tautomerization models behind the JChem tautomer search
        • Calculators performance reports
      • Calculator Plugins Licensing
      • Calculator Plugins FAQ
      • Calculator Plugins Getting Help and Support
      • Calculator Plugins History of Changes
      • Calculator Plugins System Requirements
    • Biomolecule Toolkit
      • Biomolecule Toolkit Administrator's Guide
        • Biomolecule Toolkit Deployment Guide
          • Biomolecule Toolkit Docker Setup
            • Running the Biomolecule Toolkit Container
          • Biomolecule Toolkit WAR Deployment
            • Download Package
            • System Environment Setup
            • License Files
            • Tomcat Deployment
          • Biomolecule Toolkit System Requirements
          • Database Setup for Biomolecule Toolkit
          • Schema Initialization
      • Biomolecule Toolkit User's Guide
        • Biomolecule Toolkit Library Manager
        • Biomolecule Toolkit Query Guide
          • Sequence Search Types
          • Query Features BMT
          • Sequence Search Options
          • Additional Data Handling
      • Biomolecule Toolkit API documentation
      • Biomolecule Toolkit History of Changes
    • Chemaxon Synergy
      • Chemaxon Synergy User Guide
        • Chemaxon Synergy User Guide for Team Members
          • Accessing Applicatons
          • Groups
          • Logging in to Chemaxon Synergy
          • Logging out of Synergy
        • Guide for Team Administrators
          • Inviting Other Users to the Team
          • Inactivating Users of the Team
          • Adding Another Team Administrator to the Team
          • Managing Groups
          • Managing Projects
          • Centrify configuration
      • Chemaxon Synergy Developer Guide
        • Application and Service Discovery
        • Application authentication
        • Application authorization
        • Chemaxon Synergy integration workshop
        • Synergy Features Catalogue
          • SF-001 Application info
          • SF-002 Healthcheck
          • SF-003 Application icon
          • SF-004 Web endpoints
          • SF-005 Logout
          • SF-006 Deep links
          • SF-007 Form
          • SF-008 Forms of type
          • SF-009 Form types
          • SF-010 Notification Event Types
      • Chemaxon Synergy Administrator Guide
        • Guide for System Administrators
          • Creating a Team Space
          • Registering Applications
          • Removing an application instance from a team space when it is not needed anymore
      • Chemaxon Synergy History of Changes
    • Document to Structure
      • Document to Structure User Guide
        • Configuring OSR tools for Document to Structure
      • Document to Structure Developer Guide
      • Document to Structure Format Options
      • Document to Structure Licensing
      • Document to Structure Getting Help and Support
      • Document to Structure History of Changes
        • Document to Structure Migration Guide
    • JChem Base
      • JChem Base Administration
        • Installation Guide
        • Administration Guide - JChem Manager
        • Multiuser Support
        • Tomcat Configuration
        • Administration Guide for Composite DB
        • Preparing and Running Batch Files and Shell Scripts
      • JChem Base Developer's Guide
        • Introduction for Java applications
        • JChem Chemical Database Concepts
        • File Import Export Tools
        • Modifying Structure Tables
        • R-group Decomposition Developer's Guide
        • Structure Searching
        • Utilities
        • JChem Base API documentation
      • JChem Base User's Guide
        • Query Guide
          • Search types
          • Similarity search
          • Query features JCB
          • Stereochemistry JCB
          • Special search types
            • R-group structures JCB
            • R-group Decomposition User's Guide
            • Searching in Markush targets tables
            • Reaction search
            • Polymer search
            • Sophisticated chemical formula search
          • Search options
            • Atomproperty specific search options
            • Attached data specific search options
            • Bond specific search options
            • Chemical terms specific search options
            • Database specific search options
            • General search options
            • Hitdisplay specific search options
            • Markush structure specific search options
            • Performance specific search options
            • Polymer specific search options
            • Query feature specific search options
            • Reaction specific search options
            • Resultset specific search options
            • Similarity specific search options
            • Stereo specific search options
            • Tautomer specific search options
            • Tautomer search - Vague bond search - sp-Hybridization
          • Standardization JCB
          • Hit display-coloring
          • Appendix JCB
          • Matching Query - Target Examples
        • jcsearch Command Line Tool
        • jcunique Command Line Tool
        • Homology Groups in Markush Structures
      • JChem Base FAQ
        • JCB FAQ
        • JChem Base and Cartridge Performance Information JCB
          • Environment Information of Performance Benchmark JCB
      • JChem Base History of Changes
        • JChem History of Changes from version 1.0.4 to 6.3.4
      • JChem Base Getting Help and Support
    • JChem Choral
      • Choral Installation and Administration
        • Choral Installation on Amazon Oracle RDS
        • Choral Installation on Amazon Oracle RDS and Fargate
      • Choral API Usage
      • Second Generation Search Engine
      • Choral FAQ and Known Issues
      • Comparison of JChem Choral and JChem Oracle Cartridge
      • JChem Choral History of Changes
    • JChem Oracle Cartridge
      • JChem Oracle Cartidge Administration
        • JChem Oracle Cartridge - Getting started guide
        • Installation and administration of JChem Cartridge for Oracle
      • JChem Oracle Cartridge Developer's Guide
        • JChem Cartridge for Oracle
        • Cartridge API
        • Cartridge API - Deferrred Error Handling
        • Description of parameters
        • External Java interfaces
        • Generic Molecular Descriptor Support
      • JChem Oracle Cartridge FAQ
        • JOC FAQ
        • JChem Cartridge Performance Information
          • JOC Environment Information of Performance Benchmark
      • JChem Oracle Cartridge History of Changes
      • JChem Oracle Cartridge Getting Help and Support
    • JChem Microservices
      • Calculations Web Services
      • DB Web Services
      • IO Web Services
      • Markush Web Services
      • Reactor Web Services
      • Structure Checker Web Services
      • Structure Manipulation
      • Second Generation Search Engine
      • JChem Microservices FAQ and Known Issues
      • JChem Microservices History of Changes
    • JChem PostgreSQL Cartridge
      • Getting Started JChem PostgreSQL Cartridge
      • JChem PostgreSQL Cartridge Manual
        • Installation and Administration
          • Install JPC on non standard PostgreSQL setup
          • JPC HA Installation Guide
          • Upgrade of PostgreSQL database together with JChem PostgreSQL Cartridge
        • API Usage
          • Deprecated API
          • Custom Structure Checker and Fixer in JPC
        • Citus Distibuted JChem PostgreSQL Cartridge
        • JDBC Caution
      • Second Generation Search Engine
      • JChem PostgreSQL Cartridge FAQ and Known Issues
      • JChem PostgreSQL Cartridge History of Changes
      • JChem PostgreSQL Cartridge Getting Help and Support
      • JChem PostgreSQL Cartridge Licensing
      • Comparison of JChem PostgreSQL Cartridge and JChem Oracle Cartridge
      • Migration Guide
    • JKlustor
      • What is JKlustor
      • Clustering methods
        • Hierarchical clustering
          • MCS search and LibMCS
            • Maximum Common Substructure (MCS) search
            • Library MCS (LibMCS) clustering
              • LibMCS GUI
            • LibMCS licensing
          • Ward clustering
        • Non-hierarchical clustering
          • Bemis-Murcko clustering
          • Diverse Set Selection
          • Jarvis-Patrick clustering
          • K-means clustering
          • Sphere Exclusion clustering
          • Comparing libraries with Compr
      • CreateView
      • JKlustor History of Changes
      • JKlustor licensing
    • Markush Tools
      • Markush Composer
      • Markush Enumeration
    • Marvin JS
      • User Guide
        • Getting Started
        • Editor Overview
          • Editor Canvas
          • Dialogs
            • Abbreviated Groups Dialog
              • Default Abbreviated Group List
            • Atom Properties Dialog
            • Atom Query Properties Dialog
            • Attached Data Dialog
            • Bond Properties Dialog
            • Export Dialog
            • Import Dialog
            • Periodic Table Dialog
            • Pseudo Atom Dialog
            • R-group Dialog
            • R-logic Dialog
            • Set Box Color Dialog
            • S-group Dialog
            • Text Dialog
            • View Settings Dialog
          • Toolbars
            • Atom Toolbar - Right Toolbar
            • General Toolbar - Top Toolbar
            • Template Toolbar - Bottom Toolbar
            • Tools Toolbar - Left Toolbar
          • Context Menus
            • Abbreviated Group Context Menu
            • Atom Context Menu
            • Bond Context Menu
            • Empty Space Context Menu
            • Graphical Objects Context Menu
            • R-group Label Context Menu
            • Selection Context Menu
            • S-group Context Menu
        • Drawing and Editing Options
          • Abbreviations
          • Atom
          • Atom Mapping
          • Bond
          • Chains
          • Copy Structures
          • Graphical Objects
          • Groups
          • Radicals and Lone Pairs
          • Reaction
          • Reaction Mechanism
          • R-group Representation and Editing Options
          • Rotating in 2D
          • Snapped Objects
          • Structure Templates
          • Peptides
          • Text Editing
        • Feature Overview Pages
          • Markush Structures
          • Query Structures
          • Stereochemistry
          • Reactions and Mechanisms
          • Representation of JChem Base Query Functions
        • Keyboard Shortcuts
      • Developer Resources
        • Marvin JS Installation and System Requirements
        • Embedding Marvin JS
        • Extending Functionalities with Web Services
        • Troubleshooting
        • Third Party Licenses
        • Marvin JS Web Services
      • History of Changes
      • Frequently Asked Questions
      • Video Tutorials
      • Comparison of Marvin JS and MarvinSketch Feature Sets
    • Marvin Pro
      • Installation
      • How Do I?
        • Draw a Simple Molecule (Penicillin)
        • Draw a Simple Molecule (Phytol)
        • Draw a Synthesis Scheme
        • Use Basic Chemical Intelligence
        • Draw a Publication Image
      • References
        • Tools Overview
        • Shortcuts
        • Handling of Abbreviated Groups
        • Comparison of Marvin Pro and Marvin JS Feature Sets
    • Name to Structure
      • Name to Structure User Guide
        • Custom Dictionary in Name Import
        • Custom Webservice in Name Import
      • Name to Structure Developer Guide
      • Name to Structure Format Options
      • Name to Structure Getting Help and Support
      • Name to Structure History of Changes
      • Name to Structure Licensing
    • Reactor
      • Reactor User's Guide
        • Introduction to Reactor
          • Reactor Features
        • Reactor Getting Started
          • Reactor in Step-by-Step
        • Reactor Concepts
          • Virtual Library Design
          • Smart reactions
            • Stereoselectivity
            • Regioselectivity
        • Reactor Examples
          • Simple examples
          • Multiple reactants
          • Reactivity rules
          • Reactor usage examples
          • Selectivity rules
        • Working with Reactor
          • Specifying Reactions
            • Drawing a Reaction Scheme
              • Introducing the Reaction Scheme
              • Advanced Reaction Scheme Drawing
            • Reaction Library
          • Specifying Reactants
          • Reaction Mapping
            • Orphan atoms
            • Other reaction mapping styles
          • Reaction Rules
            • Exclude Rule
            • Reactivity Rule
            • Selectivity Rule
          • Reactant Combinations
          • Running Reactor
          • Reactor Interfaces
            • Reactor Application
              • Add reaction file
              • Specify reactants
              • Set runtime options for reaction processing
                • General options
                • Advanced options
                • Synthesis code options
                • Property Copy
              • Run the reaction and generate products in batch mode
            • Reactor Command-line Application
              • Using the react command-line interface
              • Options - react CLI
                • Reaction file - React CLI
                • Input (Reactants) - React CLI
                • Reactant processing modes - React CLI
                • Output - React CLI
                • Reaction rules - React CLI
                • Product related options
                • Reporting options
                • Mapping related options
                • Special options
                • Ratio - React CLI
                • Reverse reaction - React CLI
            • Reactor in Instant JChem
            • Reactor in JChem for Excel
              • JCReactProductStructure function
                • Prerequisites of JCReactProductStructure function
                • Insert JCReactProductStructure function
                • Populate cells with JCReactProductStructure results
                • Example on multiple product as result
              • JCReactReactionStructure function
                • Prerequisites - JCReactReactionStructure
                • Insert JCReactReactionStructure function
                • Populate cells with JCReactReactionStructure result
              • Reactor Examples inJChemforExcelUsage Reactor
            • Reactor in KNIME
              • Quick help
            • Reactor in Pipeline Pilot
            • Reactor in Plexus Suite
            • API, Web Services
            • Glossary
              • Isotopes
              • Manual selection
              • Output file format
              • Product list
              • Ratio
              • Reaction File - Reaction Equation
              • Reaction stereo
              • Reversed reaction
              • Standardization in Reactor
              • Standard Properties in the Chemaxon Reaction Library
      • Reactor FAQ
      • Reactor Licensing
      • Reactor Getting Help and Support
      • Reactor History of Changes
      • Reactor Configuration Files
    • Screen
      • Introduction to Virtual Screening
      • ScreenMD
      • Screen3D
      • Screen Developer Guide
      • Screen History of Changes
      • Screen licensing
    • Standardizer
      • Standardizer User's Guide
        • Standardizer Introduction
          • Standardizer in a Nutshell
          • Why Use Standardizer
        • Standardizer Getting Started
          • Standardization in Step-by-Step
          • Quick Help on Configuration Design
        • Standardizer Concepts
          • Action
          • Standardizer Configuration
          • Standardizing Molecules
          • Typical Workflows
        • Working with Standardizer
          • Standardizer Actions
            • Add Explicit Hydrogens
            • Alias to Atom
            • Alias to Group
            • Aromatize
            • Clean 2D
            • Clean 3D
            • Clear Isotopes
            • Clear Stereo
            • Contract S-groups
            • Convert Double Bonds
            • Convert Pi-metal Bonds
            • Convert to Enhanced Stereo
            • Create Group
            • Dearomatize
            • Disconnect Metal Atoms
            • Expand S-groups
            • Expand Stoichiometry
            • Map
            • Map Reaction
            • Mesomerize
            • Neutralize
            • Remove Absolute Stereo
            • Remove Atom Values
            • Remove Attached Data
            • Remove Explicit Hydrogens
            • Remove Fragment
            • Remove R-group Definitions
            • Remove Stereo Care Box
            • Replace Atoms
            • Set Absolute Stereo
            • Set Hydrogen Isotope Symbol
            • Strip Salts
            • Tautomerize
            • Transform
            • Ungroup S-groups
            • Unmap
            • Wedge Clean
            • Remove
            • Standardizer Transform
            • Custom Standardizer Actions
            • Remove Solvents
          • Creating a Configuration Standardizer
          • Interfaces Standardizer
            • Standardizer Application
              • Setting up Profiles
            • Standardizer Editor
            • Standardizer Command-line Application
            • Standardizer JChem Base
            • Standardizer JChem for Excel
            • Standardizer Instant JChem
            • Standardizer JChem Cartridge
            • Standardizer KNIME
            • Standardizer Pipeline Pilot
          • Standardizer File Formats
      • Standardizer Developer's Guide
      • Standardizer Installation and System Requirements
      • Standardizer Licensing
        • Standardizer EULA
      • Standardizer Getting Help and Support
      • Standardizer History of Changes
    • Structure Checker
      • Structure Checker User's Guide
        • Introduction
          • Structure Checker in a Nutshell
        • Structure Checker Getting Started
        • Structure Checker Concepts
          • Checkers StrCh
          • Fixers
          • Structure Checking of Molecules
        • Working with Structure Checker
          • Checker List
            • Abbreviated Group StrCh
            • Absent Chiral Flag
            • Absolute Stereo Configuration
            • Alias
            • Aromaticity Error
            • Atom Map
            • Atom Query Property
            • Atom Value
            • Atropisomer
            • Attached Data StrCh
            • Bond Angle
            • Bond Length
            • Brackets
            • Chiral Flag
            • Chiral Flag Error
            • Circular R-group Reference
            • Coordination System Error
            • Covalent Counterion
            • Crossed Double Bond
            • Custom Checkers and Fixers
            • Double Bond Stereo Error
            • EZ Double Bond
            • Empty Structure
            • Explicit Hydrogen
            • Explicit Lone Pairs
            • Incorrect Tetrahedral Stereo
            • Isotope
            • Metallocene Error
            • Missing Atom Map
            • Missing R-group Reference
            • Molecule Charge
            • Multicenter
            • Multicomponent
            • Multiple Stereocenter
            • Non-standard Wedge Scheme
            • Non-stereo Wedge Bond
            • OCR Error
            • Overlapping Atoms
            • Overlapping Bonds
            • Pseudo Atom
            • Query Atom
            • Query Bond
            • Racemate
            • Radical
            • Rare Element
            • R-atom
            • Reacting Center Bond Mark
            • Reaction Map Error
            • Relative Stereo
            • R-group Attachment Error
            • R-group Bridge Error
            • R-group Reference Error
            • Ring Strain Error
            • Solvent
            • Star Atom
            • Stereo Care Box
            • Stereo Inversion Retention Mark
            • Straight Double Bond
            • Substructure
            • Three Dimension 3D
            • Unbalanced Reaction
            • Unused R-group Reference
            • Valence Error
            • Valence Property
            • Wedge Error
            • Wiggly Bond
            • Wiggly Double Bond
          • Creating a Configuration StrCh
          • Interfaces StrCh
            • MarvinSketch StrCh
            • Structure Checker Application
            • Structure Checker Editor
            • Structure Checker Command Line Application
            • JChem Cartridge StrCh
      • Structure Checker Developer's Guide
        • Introduction to Structure Checker API
        • Classes, interfaces and configuration
        • Implementing a new Structure Checker
        • Create Graphical User Interface for Checker Options
        • Implementing Fixers
      • Structure Checker Installation and System Requirements
      • Structure Checker Licensing
        • Structure Checker EULA
      • Structure Checker Getting Help and Support
      • Structure Checker History of Changes
    • Structure to Name
      • Structure to Name User Guide
      • Structure to Name Developer Guide
      • Structure to Name Format Options
      • Structure to Name Licensing
      • Structure to Name Getting Help and Support
      • Structure to Name History of Changes
  • Third-party Integration
    • JChem for Office
    • KNIME Nodes
      • Administration
      • Licensing
      • Getting Help and Support
      • History of Changes
    • Pipeline Pilot Components
      • Administration
      • Product Presentation
      • Getting Help and Support
      • Licensing
      • History of Changes
  • Cross Product Documentation
    • Chemaxon Configuration Folder
    • Chemical Fingerprints
      • Extended Connectivity Fingerprint ECFP
      • Chemical Hashed Fingerprint
      • Pharmacophore Fingerprint PF
      • Reaction Fingerprint RF
      • MACCS-166 Fingerprint
      • Fingerprint and descriptor generation - GenerateMD
      • Pharmacophore perception - PMapper
      • Chemical Fingerprints licensing
    • Chemical Terms
      • Available Functions
        • Functions by Categories
        • Functions in Alphabetic Order
        • Chemical Terms functions in alphabetic order
        • Notes on Chemical Terms functions
      • Chemical Terms Getting Help and Support
      • Chemical Terms Getting Started
      • Chemical Terms Introduction
      • Products using Chemical Terms
        • Chemical Terms Evaluator
          • Evaluator Examples
        • Instant JChem CT
        • JChem Base CT
        • Chemical Terms - JChem Cartridge
        • Chemical Terms - JChem for Excel
        • Chemical Terms - Reactor
        • Chemical Terms - KNIME
        • Chemical Terms - Pipeline Pilot
      • The Chemical Terms Language
        • Language Elements
        • Expression Syntax
        • Predefined Functional Groups and Named Molecule Groups
        • Initial Scripts
        • Input Contexts
        • Chemical Terms Configuration
        • Examples
          • Evaluator and JChem Cartridge Examples
          • Reactor Examples CT
          • Search Filter Examples
      • Usage examples CT
        • Basic Calculations
        • Search Filters
        • Reaction Processing
        • Markush Enumeration CT
    • File Formats
      • Basic export options
      • Compression and Encoding
        • Base64
        • GZIP
      • Document formats
        • Marvin Documents - MRV
          • MRV Export Options
          • Schema and Validation
        • Marvin Documents - CXON
        • ISISDraw sketch file - SKC
          • Features imported from SKC files
          • Features exported to SKC format
        • ChemDraw sketch file - CDX, CDXML
          • Features imported from CDX and CDXML files
          • Features exported to CDX
      • Graphics Formats
        • Image Export in Marvin
          • JPEG
          • BMP
          • PNG
          • EMF
          • PDF
          • SVG
          • TIFF
          • EPS
        • Export to POV-Ray
        • Image Import in Marvin
      • Molecule file conversion with Molconverter
      • Molecule Formats
        • CML
          • CML Export Options
        • MDL MOL files
          • MDL MOLfiles, RGfiles, SDfiles, Rxnfiles, RDfiles formats
          • Chemaxon specific information in MDL MOL files
          • MOL file compression
          • MDL MOL Import and Export Options
          • Default valence of metal atoms
        • Daylight SMILES related formats
          • SMILES
          • SMARTS
          • SMILES and SMARTS import and export options
        • Chemaxon SMILES extensions
          • Chemaxon Extended SMILES and SMARTS - CXSMILES and CXSMARTS
          • CXSMILES and CXSMARTS import and export options
          • Chemaxon SMILES Abbreviated Group
        • IUPAC InChI, InChIKey, RInChI and RInChIKey
          • InChi and InChiKey export options
        • Name
        • Sequences - peptide, DNA, RNA
          • Peptide import and export options
        • FASTA file format
          • FASTA import options
        • Protein Data Bank (PDB) file format
          • Standard PDB residues
          • PDB import and export options
        • Tripos SYBYL MOL and MOL2 formats
          • Tripos Mol2 format
          • Tripos SYBYL MOL format
        • XYZ format
          • XYZ import and export options
        • Gaussian related file formats
          • Gaussian Cube format
          • Gaussian Cube import and export options
          • Gaussian input-output format
        • Markush DARC format - VMN
          • VMN peptide import option
        • CSV
    • Input and Output System
      • Supported formats
      • Input and Output System - Import
      • Input and Output System - Export
      • Image generation
      • Importing and Exporting molecule properties
      • Molecule converter
      • Integrating your own format
    • License Management
      • License Installation
        • Installing to Desktops
        • Installing to Servers
        • License Server Configuration
        • Licensing Applets
        • Licensing via Java Web Start
        • Setting environment variables
      • License Management FAQ
      • About Chemaxon Licensing
      • Licensing Prior Version 5.0
      • License Report
      • Merging Licenses
      • EULA
    • Long Term Supported Releases - LTS
      • LTS Release
      • LTS Release Versions
      • Documentation - LTS release
    • Notice about CAS Registry Numbers®
    • Public Repository
    • Scientific Background
      • Aromatization
        • Methods
        • Differences between the Basic and General aromatization methods
        • Aromatization of query structures
        • Dearomatization
      • Stereochemistry
        • Parity
        • Tetrahedral Stereo
        • Cis-trans stereo
        • Axial stereoisomerism - atropisomerism
      • Valence Calculations
        • Alkali metals and Hydrogen
        • Alkaline earth metals
        • Transition metals, Lanthanoids and Actinoids
        • Boron group
        • Carbon group
        • Nitrogen group
        • Oxygen group
        • Halogens
        • Noble gases
        • Aromatic systems
        • Special cases - abbreviations query properties
    • Structure Representation
      • Structure Representation - Class Representation
        • MolAtom
        • MolBond
        • Molecule Graph
        • R-group structures
          • Implementation
        • Representation of reactions
        • S-groups
        • Examples for Molecule representation
      • Aromaticity
        • Converting structure from Kekule form to aromatic form
        • Differences between the basic and general methods
        • Converting structure from aromatic form to Kekule form
      • Implicit, Explicit and Query Hydrogens
        • Converting explicit Hydrogens to implicit
        • Converting implicit Hydrogens to explicit
        • Query Hydrogens
      • Assigning stereochemistry descriptors
        • CIP Stereo chemistry
        • Stereoisomers around double bonds
          • Cis Trans stereoisomers in 0 Dimension
          • Cis Trans stereoisomers in 2 or 3 Dimensions
          • EZ stereoisomers
        • Parity information
          • Parity information in 0 Dimension
          • Parity information in 2 or 3 Dimensions
        • Chirality
      • Cleaning options
      • Deprecated and Removed Methods
        • All of the Deprecated and Removed Methods
        • Methods Deprecated or Removed in version 14.7.7.0
        • Methods Deprecated or Removed in version 6.3
        • Methods Deprecated or Removed in version 6.2
        • Methods Deprecated or Removed in version 6.1
      • Relative configuration of tetrahedral stereo centers
      • Iterator Factory
      • Atom and bond-set handling
      • Graphic object handling
    • Supported Java Versions
  • Legal
    • Legal Documents
      • Cookie Policy
      • End User License Agreement
      • End User Subscription Agreement - EUSA
      • Personal Data Management - General
      • Personal Data Management - Newsletter Subscriptions
      • Privacy Policy
      • Privacy Policy for Chemaxon Synergy
      • Terms of Use
      • Terms and Conditions for UX Research Program
      • Notice for Chemaxon Software User Experience (UX) Research
      • Recording Policy
    • White Papers
      • Chemicalize Security White Paper
      • Hosted Services Security White Paper
      • SaaS Security White Paper
  • Discontinued Products
    • Document to Database
      • Document to Database Administration Guide
      • Document to Database System Requirements
      • Document to Database Licensing
      • Document to Database Getting Help and Support
      • Document to Database History of Changes
    • Fragmenter
    • JChem Neo4j Cartridge
      • JChem Neo4j Cartridge History of Changes
    • Markush Overlap
    • MarvinSpace
      • MarvinSpace User's Guide
        • What is MarvinSpace
        • MarvinSpace GUI Overview
          • Canvas - MarvinSpace
          • Menu bar
            • File Menu
            • Edit Menu
            • Display Menu
              • Draw Type Submenu
              • Color Type Submenu
              • Quality Submenu
              • Depth Cue menu item
              • Anti-alias menu item
              • Options Menu
                • Visualizers Tab
                • Surface Tab
                • Secondary Structure Tab
                • Colors Tab
                • Controls Tab
            • Show Menu
              • Labels submenu
              • Surface submenu
              • Secondary Structure menu item
            • Animation Menu
            • Help Menu
          • Pop-up menu
          • Toolbar
            • Controls
            • Monitors
            • Pharmacophore models
            • Display tools
          • Selection Panel
        • How to use MarvinSpace features
        • MarvinSpace Operations
      • MarvinSpace Developer's Guide
        • MarvinSpace parameters
          • Scene parameters
          • Action parameters
          • Ligand parameters
          • Macromolecular parameters
          • Water parameters
          • Ion parameters
          • Pharmacophore parameters
          • Surface parameters
          • Secondary Structure parameters
        • Step-by-step example - displaying atom properties
        • Step-by-step code examples
        • Surface coloring in MarvinSpace
      • MarvinSpace History of Changes
    • Metabolizer
    • Plexus Suite
      • Quick Start Guide - Plexus Suite
      • Plexus Suite User Guide
        • Log in to Plexus Suite
        • The Plexus Suite Dashboard
        • Importing New Data
        • Exporting Your Data
        • Browsing in Your Data Set
          • Synchronized Database Views
        • Selecting Data
        • Searching in Your Database
          • Structure Search in Plexus Connect
        • Saved Queries
        • List Management
        • Sorting Data
        • Sharing Data with Other Users
        • Calculating Molecular Properties for Single Compounds
        • Adding calculated columns to tables
        • Scaffold Based Enumeration
        • Reaction Based Enumeration
        • Registering Molecules in the Corporate Database
        • Charts view
      • Plexus Suite Video Tutorials
      • Plexus Suite Administrator Guide
        • Plexus Suite Authentication
        • Sharing Schema Items Among Users
        • Business Flags
        • Row-level Security
        • Building blocks
        • Admin Tools
          • Messaging
          • Getting the Plexus Backend and Frontend Log Files
        • Adding JavaScript Files for Custom Functionality
        • Writing JavaScript Files for Custom Functionality
        • Integration with Chemaxon's Compound Registration System
        • Shared data sources in Plexus Connect
        • Configuration Files
        • Edit Views
        • Simple table
      • Installation and System Requirements of Plexus Suite
      • Plexus Suite Licensing
        • About Chemaxon Licensing - Plexus Suite
        • End User License Agreement (EULA) - Plexus Suite
        • Installing Licenses
        • Merging License Files
        • Frequently Asked Questions about Licensing - Plexus Suite
        • License Report - Plexus Suite
      • Getting Help and Support for Plexus Suite
        • Troubleshooting for Plexus Suite
      • Plexus Suite FAQ
      • Plexus Suite Privacy Policy
      • Terms of Use for the Plexus Suite Demo Site
      • Plexus Suite History of Changes
      • Schema Refresh Without Restart
    • JChem Web Services Classic
      • JChem Web Services Classic History of Changes

    Working with Structures in Excel

    It is possible to insert chemical structures into cells of Excel worksheets and edit, resize, copy and paste, or hide (and show again) them as well.

    This section consists of the following subsections:

    • Add a Structure to a Cell

    • Edit a Structure in a Cell

    • Edit Structures in the Task Pane

    • Resize Structures

    • Structures in Merged Cells

    • Show and Hide Structures

    • Show and Hide Structures and Structure IDs

    • Insert Single Structures

    • Open Structure Files

    • Delete Structures from a Selected Range

    • Save Single Structure to a File

    • Print Structures

    • Copy and Paste with JChem for Excel

      • Inside Excel

        • Copy Structures with or without Data

        • Exclude Hidden Rows

      • To External Applications from JChem for Excel

        • Copy and Paste with IDs

        • To External Structure Editors

        • Copy and Paste Single Structures with Keyboard Shortcuts in JChem for Excel

      • From External Applications to JChem for Excel

        • From External Structure Editors to JChem for Excel

        • From Instant JChem to JChem for Excel

    • Convert from Structures

      • Convert Structures to Images

      • Convert Structures to Text

    • Convert to Structures

      • Convert Images to Structures

      • Convert Text to Structures

    • Convert ISIS, ChemDraw, Accord, and Insight for Excel Files to JChem for Excel Files

      • JChem for Excel File Converter Action

      • JChem for Excel File Converter Context Menu Item

      • JChem for Excel File Converter Tool

    • Calculations with Third-Party Services

    • Specify External Image and Name Services