| Name of deprecated class, field or method | 
Deprecation version | 
Recommended class, field or method | 
| #####  chemaxon.struc | 
 | 
 | 
MDocument.setGUIProperyContainer(MPropertyContainer gpc) | 
Marvin 6.1 | 
chemaxon.struc.MDocument.setGUIPropertyContainer(MPropertyContainer) | 
MObject.addNotify() | 
Marvin 6.1 | 
chemaxon.struc.MObject.addNotify(MDocument) | 
MObject.removeNotify() | 
Marvin 6.1 | 
chemaxon.struc.MObject.removeNotify(MDocument) | 
StereoConstants.CTUNKNOWN | 
Marvin 6.1. | 
Usage: In the specified methods the CIS | 
TRANS or   CIS | 
TRANS | 
CTUNSPEC values are used instead. | 
| #####  chemaxon.struc.graphics | 
 | 
 | 
MEFlow.getValidSinkAtomPairsForMolecule(Molecule m, MolAtom source) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSinkAtomPairs(Molecule, MolAtom) | 
MEFlow.getValidSinkAtomPairsForMolecule(Molecule m, MolBond source) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSinkAtomPairs(Molecule, MolBond) | 
MEFlow.getValidSinkAtomsForMolecule(Molecule m, MolAtom source) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSinkAtoms(Molecule, MolAtom) | 
MEFlow.getValidSinkAtomsForMolecule(Molecule m, MolBond source) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSinkAtoms(Molecule, MolBond) | 
MEFlow.getValidSinkBondsForMolecule(Molecule m, MolAtom source) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSinkBonds(Molecule, MolAtom) | 
MEFlow.getValidSinkBondsForMolecule(Molecule m, MolBond source) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSinkBonds(Molecule, MolBond) | 
MEFlow.getValidSourceAtomPairsForMolecule(Molecule m) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSourceAtomPairs(Molecule) | 
MEFlow.getValidSourceAtomsForMolecule(Molecule m) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSourceAtoms(Molecule) | 
MEFlow.getValidSourceBondsForMolecule(Molecule m) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.getValidSourceBonds(Molecule) | 
MEFlow.isValidSourceAndSinkForMolecule(Object source, Object sink, Molecule m) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.isValidFlow(MolAtom, MolAtom, Molecule) | 
MEFlow.isValidSourceForMolecule(Object source, Molecule m) | 
Marvin 6.1 | 
chemaxon.struc.graphics.util.EFlowPlacementValidators.isValidSource(MolAtom, Molecule)  chemaxon.struc.graphics.util.EFlowPlacementValidators.isValidSource(MolAtom[], Molecule)  chemaxon.struc.graphics.util.EFlowPlacementValidators.isValidSource(MolBond, Molecule) | 
| ### Removed methods | 
 | 
 | 
| Name of removed class, field or method | 
Removal version | 
Recommended class, field or method | 
| #####  chemaxon.struc | 
 | 
 | 
MProp.CONV_SELFREF | 
Marvin 6.1 | 
Option for converting self-referring properties is passed to chemaxon.marvin.io.MPropHandle.convertToString(MProp,String) in the format string as 'format' + ":-selfrefprops". |