Overlapping Bonds

    • Checker searches for overlapping bonds: bonds crossing each other or bonds closer to each other than the set minimal value.

    • Fixer offers cleaning the structure by:

      1. 2D clean or (clean);

      2. partial clean (partialclean).

      Example :

      Overlapping Bonds Checker (overlappingBonds) Warning: Fix
      Clean (clean)
      Detect Overlapping Bonds images/download/attachments/1806474/ex_overlappingbonds_ch.png ex_overlappingbonds_ch images/download/attachments/1806474/ex_overlappingbonds_f.png ex_overlappingbonds_f

      Note : Bridged polycycles are cleaned as far as their structure allows it, and the overlapping bonds warning will remain.