| Codename | Explanation |
|---|---|
| ocrCorrection | converts names containing typical OCR (optical character recognition) errors (off by default). Example: convert the defective name "3-rnethyl-l-methoxynaphthalene" to SMILES molconvert 'smiles:T*' -s '3-rnethyl-l-methoxynaphthalene' -f name:ocrCorrection |
| -systematic | disable conversion of systematic names |
| -common | disable conversion of common names (such as aspirin ) |
| -elements | disable conversion of the name of chemical elements, for instance carbon, sodium, .... Even though "carbon" is not converted, "methane" still is, since it is a molecule name for CH4, not an element. |
| -ions | disable conversion of atomic ion syntax, for instance "Ca2+". |
| -groups | disable conversion of groups and fragments, such as "oxo" or "methyl". |
| -cas | disable the conversion of CAS registry numbers |
| -casNames | disable the conversion of CAS names |
| nameField=FIELD | sets the field/property that stores the original name. By default, the molecule title is used. |
| dict= PATH | specify the location of the custom dictionary. Example: name:dict=C:\Users\Me\MyDictionary.smi. |
| webservice= URL | enable the usage of a custom webservice at the given URL |
Some of these options are mainly useful when configuring which names Document to Structure recognizes.
To enable an option, a + sign can be used before the option name. For instance, both forms ocrCorrection and +ocrCorrection are accepted to enable this option.