Name to Structure Format Options

    Codename Explanation
    ocr converts names containing OCR (optical character recognition) error. Example : convert the defective name "3-rnethyl-l-methoxynaphthalene" to SMILES molconvert 'smiles:T*' -s '3-rnethyl-l-methoxynaphthalene' -f name:ocr
    -systematic disable conversion of systematic names
    -common disable conversion of common names (such as aspirin )
    -elements disable conversion of the name of chemical elements, for instance carbon, sodium, .... Even though "carbon" is not converted, "methane" still is, since it is a molecule name for CH4, not an element.
    -ions disable conversion of atomic ion syntax, for instance "Ca2+".
    -groups disable conversion of groups and fragments, such as "oxo" or "methyl".
    -cas disable the conversion of CAS registry numbers
    -casNames disable the conversion of CAS names
    nameField=FIELD sets the field/property that stores the original name. By default, the molecule title is used.
    dict= PATH specify the location of the custom dictionary. Example: name:dict=C:\Users\Me\MyDictionary.smi.
    webservice= URL enable the usage of a custom webservice at the given URL

    Some of these options are mainly useful when configuring which names Document to Structure recognizes.

    To enable an option, a + sign can be used before the option name. For instance, both forms ocr and +ocr are accepted to enable this option.