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Map Reaction

This action assigns map numbers to the corresponding atoms on the two sides of the reaction arrow.

Options:

  • Select the mapping style as Complete , Matching , or Changing.
  • "Map reaction" can also Mark bonds that have changed in the reaction.
  • Keep existing mapping (on by default)

Note : Reactions are mapped by the AutoMapper User's Guidetool.

Action "mapreaction" considers only reactions; molecules or multiple fragments are not mapped.

Example :

Action Input Output
Map Reaction (mapreaction) images/download/attachments/1803699/aromatize1_in.png map reaction input No action will be performed
Map Reaction (mapreaction) images/download/attachments/1803699/map_atom2_in.png map reaction input images/download/attachments/1803699/map_atom2_out.png map reaction output