absLabelVisible |
Show (true) or hide (false) "Absolute" label |
false |
aminoAcidBondColoringEnabled |
Enable (true) or disable (false) peptide bridge coloring |
true |
atomFont |
Atom symbol/label font: Serif, SansSerif or Monospaced |
SansSerif |
atomMappingVisible |
Show (true) or hide (false) atom mapping |
true |
atomPropertiesVisible |
Show (true) or hide (false) atom properties |
true |
atomNumbersVisible |
Deprecated |
N/A |
atomNumberingType |
Sets the type of atom numbering to Off(0), Atom numbers (1) or IUPAC numbering (2) |
0 |
valencePropertyVisible |
Show (true) or hide (false) valence properties |
true |
atomsize |
Atom symbol font size in C-C bond length units: atomsize 1.54 Å = atomsize scale points, where scale is the current magnification. |
0.4 |
atomSymbolsVisible |
Show (true) or hide (false) atom symbols in 3D view |
true |
bondLengthVisible |
Show (true) or hide (false) bond length labels |
false |
bondSpacing |
Double bond spacing in C-C bond length units: spacing 1.54 Å = spacing scale pixels, where scale is the current magnification. |
0.18 |
chargeWithCircle |
Charge label (plus or minus sign) is displayed circled(true) or normal(false) |
false |
chiralitySupport |
When to show atom chirality (R/S).
off - never
selected - if the chiral flag is set for the molecule or the atom's enhanced stereo type is absolute
all - always |
off |
circledChargeFont |
Circled charge labels font: any of the fonts installed on the machine. Deprecated, will be removed by January 1st, 2016. |
SansSerif |
circledChargeSize |
Deprecated. |
N/A |
colorScheme |
Color scheme.
mono - monochrome
cpk - Corey-Pauling-Kultun
shapely - shapely (residue types)
group - residue sequence numbers |
cpk |
downWedge |
Wedge bond display convention. Down wedge points downward in MDL's convention (mdl), upward (at the chiral center) in Daylight's (daylight). |
mdl |
explicitH |
Show (true) or hide (false) explicit hydrogens. |
true |
ezVisible |
Show (true) or hide (false) E/Z labels. |
false |
grinv |
Show (true) or hide (false) graph invariants |
false |
implicitH |
How to display H labels.
off
hetero - on heteroatoms
heteroterm - on hetero or terminal atoms
all - all atoms |
false |
ligandErrorVisible |
Show (true) or not (false) ligand error by coloring to red. |
false |
lonePairsVisible |
Show (true) or hide (false) lone pairs |
false |
peptideDisplayType |
Show peptide sequences with one letter or three-letter abbreviations. Valid values are "1-letter" and "3-letter" |
3-letter |
rgroupsVisible |
Show (true) or hide (false) R-group definitions |
true |
selection0selection1selection2... |
Comma-separated list of atom numbers (0, ..., n-1). Selected atoms are highlighted. In a simple one-molecule viewer, selection0 must be used. In a molecule table, selection n corresponds to molecule cell n . |
N/A |
showSets |
Show the specified atom sets only. A comma-separated list of set sequence numbers (0, ..., 63). |
heteroterm |
sketchAnyBond |
Display type of the Any bond in the sketcher:
auto - displayed as a dashed line in most cases, solid line only when all bonds are generated from atom coordinates (e.g. XYZ and PDB files).
dashed - displayed as a dashed line
solid - displayed as a solid line |
auto |
valenceErrorVisibleInView |
Show (true) or hide (false) valence errors |
true |
viewAnyBond |
Display type of the Any bond in the viewer:
auto - displayed as a dashed line in most cases, solid line only when all bonds are generated from atom coordinates (e.g. XYZ and PDB files).
dashed - displayed as a dashed line
solid - displayed as a solid line |
auto |
zeroBasedAtomIndexing |
Starts the atom indexing from zero instead of one:
true - atom indexes are started from zero
false - atom indexes are started from one |
false |
viewAtomMarkEnabled |
Enables (true) or disables (false) atom highlight and atom mark in View. |
true |
viewCarbonVisibility |
Display the label of carbon atoms in structures.
on - Always show the atom labels of carbon atoms.
off - Never show the atom labels of carbon atoms.
inChain - Show the atom labels of carbon atoms at straight angles and implicit Hydrogens. |
inChain |
viewLigandOrderVisibility |
Display the ligand order of R-group atoms in structures.
on - Always show the ligand order of R-group atoms.
off - Never show the ligand order of R-group atoms.
showOnlyWithDefinition - Show the ligand order of R-group atoms only on R-groups with a definition. |
off |