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Overlapping Atoms

  • Checker searches for overlapping atoms, i.e., atoms closer than the pre-set percentage of the default atom radius.
  • Fixer offers cleaning the structures by:

    1. 2D clean (clean) or;

    2. partial clean (partialclean).

  • Optimized to show only the terminal carbon and hydrogen atoms so the overlap of the inter-chain atoms is not taken into consideration

Example :

Overlapping Atoms Checker (overlappingAtoms) Warning: Fix
Clean (clean)
Detect Overlapping Atoms overlapping atoms checked overlapping atoms fixed