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Structure Parameters

Parameter Meaning Default
atomSetColor0atomSetColor1...atomSetColor63 Atom set color as a hexadecimal value. N/A
bondSetColor1...bondSetColor63 Bond set color as a hexadecimal value. N/A
importConv Conversion(s) after molecule loading. Currently, the following options are implemented:
  • General aromatization ("a" or "+a")
  • Basic aromatization ("a_bas" or "+a_bas")
  • Dearomatization ("-a")
  • Add explicit H atoms ("H" or "+H")
  • Remove explicit H atoms ("-H")
  • Automatic cleaning ("c")
N/A
cleanDim The number of space dimensions for cleaning. 2 - two-dimensional cleaning, 3 - three-dimensional cleaning. See also: cleanOpts, importConv 2
cleanOpts Options for 2D or 3D cleaning. cleanOpts accepts the same parameter values as clean2dOpts or clean3dOpts depending on the cleaning dimension (cleanDim). N/A
clean2dOpts Options for 2D cleaning (0D->2D) See base 2D cleaning options N/A
clean3dOpts Options for 3D cleaning (0D->3D) See base 3D cleaning options N/A
setColoringEnabled Atom/bond set coloring. true
valenceCheckEnabled Check valence errors in molecules on the SketchPanel (true) or not (false). true