Ligand.DrawType |
Draw type of all ligands/small molecules on the scene |
"Wire", "Stick", "Ball", "BallAndStick", "StickAndBall", "BallAndWire", "WireAndBall", "Spacefill" |
BallAndStick |
Ligand.ColorType |
Color type of all ligands/small molecules on the scene |
"Constant", "CPK" |
CPK |
Ligand.Quality |
Quality of all ligands/small molecules on the scene |
"High", "Medium", "Low" |
Medium |
Ligand.Hydrogens |
Hydrogens of ligands are displayed or not. Note that hydrogens are always calculated whether they are described in the input or not. |
true, false |
false |
Ligand.LonePairs |
Lone pairs of ligands are displayed or not. |
true, false |
false |
Ligand.BallRadius |
Radius of displayed balls in angstroms |
Double |
0.4 |
Ligand.BondRadius |
Radius of bond cylinders in ball&stick mode in angstroms |
Double |
0.1 |
Ligand.StickRadius |
Radius of bond cylinders in stick mode in angstroms |
Double |
0.3 |
Ligand.LineWidth |
Width of displayed lines in wire mode in pixels |
Double |
2 |
Ligand.BondDistance |
Gap between two lines/sticks representing a double bond. It is determined as a percentage of Bond radius. |
Integer |
100 |
Ligand.BondWidth |
Thickness of line/stick representing a double bond. It is expressed relative to the thickness of a single bond. |
Integer |
50 |
Ligand.SmoothStickStyle |
Smooth, shaded display of two colored bonds |
true, false |
false |
Ligand.ScaledBalls |
Are balls scaled according to vdW radius or have uniform size in ball mode or not |
true, false |
false |
Ligand.DisplayBondOrder |
Double, aromatic bonds are displayed differently from single bonds or not |
true, false |
true |
Ligand.Color |
The color used in constant color mode |
java.awt.Color |
#fff050 |