ChemAxon Assay evolved from using two types of Procedures to only one, that is called now Protocol. If you need help to translate your template files to fulfill the new requirements, please contact us through ChemAxon's support center.
Manual changes for template file (updating Assay from version 11.x or prior to 12.1 or later
Mapping tab: remove column C, rename header of column B to 'Protocol (abbrev.)'
Procedures tab: rename tab to Protocols, remove column D (Type)