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    • Standalone Applications
      • Chemaxon Assay
        • User guide for Assay
          • Processed data upload
          • Template File Usage
        • Administration guide for Assay
        • Assay Release Notes
          • Manual for Migration from Procedure to Protocol
      • ChemCurator
        • ChemCurator Getting Help and Support
        • ChemCurator History of Changes
        • ChemCurator Installation and System Requirements
        • ChemCurator Licensing
        • ChemCurator User's Guide
        • Command-Line Mode
        • Integration Server Administrator Guide
      • Chemicalize
        • Introduction to Chemicalize
        • Getting started with Chemicalize
        • Chemicalize User's Guide
        • Subscription management
        • Technical issues & Troubleshooting
        • Chemicalize Frequently Asked Questions
        • Getting Help & Support
      • ChemLocator
        • ChemLocator Installation
          • Hardware Requirements
          • Software requirements
          • Prerequisites: Docker
          • Prerequisites: Azure AD
          • Installation Guide
          • Uninstallation
        • ChemLocator Configuration
          • First-time configuration
          • Indexing
        • ChemLocator Upgrade
        • ChemLocator Overview
          • File Formats
        • ChemLocator Search
          • Supported Browsers
        • ChemLocator Migration
        • How To
        • Troubleshoot
        • Changelog
      • cHemTS
        • User Guide
          • Login in Compliance Checker
          • Single Check
          • File check
        • Administration Guide
          • Install Guide
          • System Requirements
          • Configuring
          • Administration GUI
        • Developer Guide
          • API integration
          • Workflow tools
        • Getting Help and Support
        • History of Changes
          • Software
          • Knowledge Base
      • Compliance Checker
        • User Guide
          • Login in Compliance Checker
          • Single Check
          • File check
        • Administration Guide
          • Installation Guide
          • System Requirements
          • Configuring
          • Administration GUI
            • Login as Administrator
            • Update the regulations
            • System monitor
            • Category group editor
            • User-defined category editor
            • History
              • Database update history
              • File check history
              • Single check history
            • Report template editor
        • Developer Guide
          • API integration
          • Workflow tools
        • Getting Help and Support
        • History of Changes
          • Software
          • Knowledge Base
        • Try out!
      • Compound Registration
        • Administration Guide
          • Installation Guide
            • Database setup
            • Deploying the application
            • Install through the wizard
            • Command Line Tools
            • Configuration Guide
          • Upgrade Guide
          • System Requirements
        • User guide
          • Overview
          • Compound Registration Introduction
          • Compound Registration Abbreviations
          • Definitions of Terms
          • Quick Start Guide
            • Register a new compound
            • Register a new lot
            • Register a new compound reviewing matches
            • Dealing with failed submissions
            • Register compounds without structures
          • Login
          • Dashboard page
          • Autoregistration
            • Registration page
            • Register a Virtual Compound
          • Bulk Upload
            • Upload compounds
              • Upload summary page
            • Update compounds
              • Update summary page
            • Upload salts and solvates
          • Advanced Registration
            • Register from the Registration page
            • Registering from the Submission page
              • Registering new structures
              • Registering matching structures
              • Possible status messages - how to register
            • Staging area
              • Actions in the Staging area
              • Workspace
              • Status message
              • Structure area
              • Data fields
              • Card
          • Search
            • Structure search option
              • Type of search
              • Match type
              • Search query
            • Bulk edit of additional data
            • Download
          • User Profile
          • Browse page
            • Browser
            • Browse-card
            • Parent level amendment
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          • Appendix A. Calculations
          • Appendix B. Markush Structures
          • Multi-Component compounds
          • Restricted compounds
        • Configuration guide
          • Access Control
            • Users and groups
            • Groups and roles
            • Project based access
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          • Forms and Fields
            • Form Editor
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          • Chemistry
          • Chemical structures
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        • Developer guide
          • API documentation
          • API authentication
          • Downstream
        • History of Changes
        • FAQ
      • Design Hub
        • History of changes
        • Install guide
          • Configuration guide
          • Install guide - Kubernetes
          • Developer guide - company support plugins
        • Plugin Catalogue
        • Developer guide - REST API
        • Developer guide - Plugins
        • Developer guide - resolver plugins
        • Developer guide - real time plugins
        • Developer guide - real time plugin templates
        • Developer guide - export plugins
        • Developer guide - storage plugins
        • Developer guide - import plugins
        • Developer guide - registry plugins
        • Developer guide - theme customization
      • Instant JChem
        • Instant Jchem User Guide
          • Getting Started
            • About Instant JChem
            • Additional Help Material
            • Instant JChem Terminology
            • How the Instant JChem items fit together
            • Windows Menus and Toolbars
            • Instant JChem Quick Start
            • User Settings
            • Licenses
            • Instant JChem Dictionary
          • IJC Projects
            • About Projects
            • Creating New Project
            • Shared Projects
          • IJC Schemas
            • About IJC Schemas
            • Adding New Schema
            • Connecting to Existing Schema
            • Logging into Schema
            • Editing Schema Connection Settings
            • Deleting Schema
            • Backing up and Restoring Schema
            • Validating Schema
          • Viewing and Managing Data
            • Viewing Data
              • Multiple Data Result Set
              • Viewing multi-entity data
            • Form View
              • Design Mode
              • Browse Mode
              • Query Mode
            • Grid View in Instant JChem
            • Grid View from Selection
            • Form Widgets
              • Standard Widgets
                • TextField Widget
                • TextArea Widget
                • Button Widget
                • Label Widget
                • CheckBox Widget
                • Date Widget
                • List Widget
                • Browser Widget
                • Table Widget
                • Multi Field Sheet Widget
                • MolPane Widget
                • Structure Matrix Widget
                • TreeTable Widget
                • Canvas Widget
              • Visualisation Widgets
                • Histogram Widget
                • Scatter Plot Widgets
                • Radar Chart Widget
                • Box Plot Widget
              • Container Widgets
                • Panel Widget
                • Tabbed Panel Widget
            • Conditional Formatting
              • Step by Step guide
              • Creating Templates
            • Copying views
            • Adding and Deleting Rows
              • Editing Multiple Values
            • Printing
            • Renderers
            • Pivoting in IJC
          • Lists and Queries
            • Running Queries
              • Query Overview
              • Query Builder
              • Building Queries
              • Executing Queries
              • Form Based Query
              • Federated Search
            • List and Query Management
            • Cherry Picking
          • Collaboration
            • Sharing Items
            • Instant JChem URLs
          • Import and Export
            • Using File Import
            • RDF File Import
            • Merging Data
            • Exporting Data
          • Editing Databases
            • About Primary Keys
            • Controlling Editability
            • Editing Schemas
              • Editing Data Trees
              • Editing Entities
              • Editing Existing Schemas
              • Editing Fields
                • Calculated Fields
                • Extension Fields
                • Pick list
                • URL Fields
                • Standard Fields
              • Editing Relationships
            • Schema Editor
            • Structure Views
            • Using Multiple Database Schemas
          • Relational Data
            • About Relationships
            • About Data Trees
            • Editing Child Data
          • Chemical Calculations and Predictions
            • About Chemical Calculations and Predictions
            • Adding Chemical Terms Fields
          • Chemistry Functions
            • Performing an Overlap Analysis
            • Standardizer - Standardizing Structure Files
            • Markush Enumeration in IJC
            • Reaction Enumeration
            • R-group analysis
          • Security
            • About Instant JChem Security
            • Changing Security Settings
            • Managing User Database
            • Managing Current Users
            • Security Templates
            • Row level security
            • Using database authentication
            • Oracle JDBC connection encryption
            • Upgrade to Spring Security 6 framework
          • Scripting
          • Updating Instant JChem
            • About Updating Instant JChem
            • About Managing Plugins
            • Updating a Multi-User IJC Installation
          • Tips and Tricks
            • Memory Usage
            • Performance Tips
            • Database Implementation Notes
            • Using the database explorer
            • Change standardizer configuration for JChem table
            • Setting up cartridge tables for use in IJC
            • Triggers and sequences
              • Triggers and sequences - Derby
              • Triggers and sequences - MySQL
              • Triggers and sequences - Oracle
          • Instant JChem Tutorials
            • Building a relational form from scratch
            • Building more complex relational data models
            • Defining a security policy
            • Filtering items using roles
            • Lists and Queries management
            • Query building tutorial
            • Reaction enumeration analysis and visualization
            • SD file import basic visualization and overlap analysis
            • Using Import map and merge
            • Using Standardizer to your advantage
            • Pivoting tutorial
            • Handling Remote Data with Web Service Entity
            • Exploring Canvas Widget in Instant JChem
        • Instant JChem Administrator Guide
          • Admin Tool
            • Admin Tool connection
            • Clone operation
            • Finish Wizard
            • Migrate operation
            • Delete operation
            • Schema security operation
            • Unlock operation
            • Change owner operation
            • Create JWS files operation
            • Short Descriptions
              • ChangeOwnerShort
              • CloneShort
              • CreateSharedShort
              • DeleteShort
              • MigrateShort
              • RenameShort
              • SecurityShort
              • UnlockShort
            • Create *.ijs file for schema(s)
          • IJC Deployment Guide
          • Supported databases
          • JChem Cartridge
          • Choral Cartridge
          • Using Oracle Text in Instant JChem
          • JChem Postgres Cartridge in IJC
          • Deployment via Java Web Start
          • Startup Options
          • Shared project configuration
          • Accessing data with URLs
          • Instant JChem Meta Data Tables
          • Test to Production Metadata Migrator
          • Filtering Items
          • Deploying the IJC OData extension into Spotfire
          • Reporting a Problem
            • Extracting Version Information
            • Obtaining Log Files
            • Problems with Performance
              • Obtaining Performance Log
            • SQL Logging
            • Clean IJC Re-installation
          • Manual Instant JChem schema admin functions
          • SQL Scripts for Manual Schema Upgrade
          • Database Row Level Security
          • JccWithIJC
        • Instant JChem Developer Guide
          • Working With IJC Architecture
          • IJC API
          • Groovy Scripting
            • Good Practices
            • Schema and DataTree Scripts
              • Simple SDF Exporter
              • Relational SDF Exporter
              • CDX File Importer
              • Data Merger or Inserter from an SDF file
              • Markush DCR Structures Exporter
              • Select Representative Member of Clusters
              • Table Standardizer
              • Populate a Table with Microspecies
              • Create a Diverse Subset
              • Pearson Linear Correlation Co-efficient Calculator
              • PDF Trawler
              • Simple Substructure Search
              • Intersecting Sets
              • Find Entries with Duplicated Field Value
              • Importing Multiple SDF Files
              • Calling External Tools
              • Create Relational Data Tree
            • Forms Model Scripts
              • Create New Form
              • Create New Grid
              • Create New Panel
              • Create New Tabbed Pane
              • Copy Existing Form
              • Canvas Widget Scripts
            • Button Scripts
              • Execute Permanent Query
              • Patent Fetcher Button
              • Batch Searching Button
              • Import or Export a Saved Query SDF Button
              • Back and Next Buttons
              • Add Annotations Button
              • Simple Structure Checker Button
              • Advanced Structure Checker Button
              • Calculate MolWeight and generate SMILES
              • Get Current User
              • Simple ChemicalTerms evaluator
              • Edit Molecule Button
              • TanimotoMultiple
              • Execute Permanent Query Based On Its Name
              • Open existing view in the same dataTree
              • Export selection to file
              • Generate random resultset from actual resultset
            • Form Scripts
              • Drop Down Input Dialog
              • Log user and date upon row addition
              • Scripting hooks
            • Groovy Scriptlets
              • Buttons vs Scripts
              • Creating New Entities
              • Creating New Fields
              • Reading Molecules From a File
              • Insert or Update a Row
              • Evaluator
              • Create or Find a Relationship
              • Adding an Edge to a Data Tree
              • Exporting Data to a File
              • Connect to an External Database
              • Create a New ChemTerm Field
              • Create a New Dynamic URL Field
              • Create a New Static URL Field
          • Java Plugins
            • IJC Plugin Quick Start
            • IJC Hello World Plugin
            • IJC Plugin tutorial - MyAddField plugin
            • IJC Plugin tutorial - MyMathCalc plugin
            • IJC Plugin tutorial - Renderer Example
            • IJC Plugin tutorial - MySCServer webapp
            • IJC Plugin tutorial - MySCClient plugin
            • IJC Plugin tutorial - Canvas widget
            • Java Plugins and Java Web Start
        • Instant JChem FAQ
        • Instant JChem Installation and Upgrade
          • Installation on Windows
          • Installation on Mac OS X
          • Installation on Linux or Solaris
          • Installation on Other Platforms
          • Uninstall
          • Changing Java Version
        • Instant JChem Licensing
        • IJC Getting Help and Support
        • Instant JChem System Requirements
        • Instant JChem History of Changes
      • Markush Editor
        • Markush Editor Help and Support
        • Markush Editor History of Changes
        • Markush Editor Installation and System Requirements
        • Markush Editor Licensing
        • Markush Editor User's Guide
      • Marvin Desktop Suite
        • MarvinSketch
          • User Guide
            • Getting Started
            • Graphical User Interface
              • Canvas
              • Menus
                • File Menu
                • Edit Menu
                • View Menu
                • Insert Menu
                • Atom Menu
                • Bond Menu
                • Structure Menu
                • Calculations Menu
                • Services Menu
                • Help Menu
              • Toolbars
                • General Toolbar
                • Tools Toolbar
                • Atoms Toolbar
                • Simple Templates Toolbar
                • Advanced Templates Toolbar
                • Search Online Toolbar
                • Special Toolbars
              • Context Menus
              • The Status Bar
              • Dialogs
                • Multipage Settings
                • Document Style
                • Template Library Manager
                • Edit Source
                • Customize
                • Where Are the Settings Stored
                • Format Dialog
                • Periodic Table
                • Preferences
                • Create Group Dialog
                • Attach Data
                • Edit Properties
                • About
              • Shortcuts
              • Customizing the GUI
              • Configurations
              • Services Module
                • Set Services
                • Settings of the Different Service Types
                  • Local
                  • HTTP Service
                  • SOAP Service
            • Working in MarvinSketch
              • Structure Display Options
                • Customizing Structure Drawing Styles
                  • Drawing Settings
                  • Drawing Styles
                • Structure Display
                • Color Schemes
                • Display Options for Implicit and Explicit Hydrogens
                • Displaying the Label of Carbon Atoms
                • Error Highlighting
                • Saving Display Options
              • Basic Editing
                • Selecting a Structure
                • Copy-Paste and DragandDrop
                • Geometric Transformation of Structures and Objects
                  • Moving and Rotating
                  • Scaling
                  • Flipping
                  • Mirroring
                  • Inverting
                • Cleaning
                • Deleting a Structure
                • Editing the Source
              • Drawing Simple Structures
                • Draw Atoms
                • Draw Bonds
                • Draw Chains
                • Sprouting
                • Merge Structures
                • Templates
                • Draw Stereocenters
                • Draw Coordination Compounds
                • Insert-Edit New Structure or Fragment
                • Atom Label Editor
              • Drawing More Complex Structures
                • Substructure Groups
                  • Abbreviated (Superatom) Groups
                  • Polymers
                    • Draw Polymers
                    • Structure-based Representation of Polymers
                      • Structural Repeating Unit (SRU) Polymers
                      • Repeating Units with Repetition Ranges - Frequency Variation
                      • Copolymers
                    • Source-based Representation of Polymers
                  • Unordered Mixtures and Ordered Mixtures
                  • Charge of the Group
                • Markush Structures
                  • R-groups
                  • Atom Lists and NOT Lists
                  • Position Variation
                  • Homology Groups
                  • Frequency Variation
                    • Repeating Units with Repetition Range
                    • Link Nodes
                • Biomolecules
                • Atom, Bond, and Molecule Properties
              • Drawing Reactions
                • Creating Reactions
                • Mapping Reactions
                • Electron Flow Arrows
              • Using Integrated Calculations
              • Graphical Objects
                • Adding, Editing and Formatting Text
                • Drawing Shapes
              • Import and Export Options
                • Opening a Molecule File
                • Saving a Molecule File
                • Exporting to Image
              • Multipage Documents
                • Creating a Multipage Document
                • Navigating in Multipage Documents
              • Printing
            • Chemical Features
              • Valence Check
              • Structure Checker
              • Charges, Isotopes, Radicals
                • Charges
                • Isotopes
                  • Isotope List Editing
                • Radicals
              • Stereochemistry
              • Reaction Schemes
              • Abbreviated Groups - Superatom Group
              • Query Features
                • R-groups
                • Link Nodes
                • Atom Lists and NOT Lists
                • Atom Properties
                • Generic Query Atoms
                • Homology Groups
              • Attached Data
              • Calculations
                • Analysis Box
                • Calculator Plugins in MarvinSketch
            • Marvin OLE User Guide
              • Install and Uninstall
              • How to Use
              • Customizing Marvin OLE Editing Mode
              • Redirecting Other Vendors' OLE Objects to Marvin OLE
              • Logging
              • Troubleshooting and Administration
              • Known Issues
            • Appendix
              • Customizing
              • Trademarks
            • Tutorials
            • Application Options
              • Java VM Options in MarvinSketch
              • Running the Applications
          • Developer Guide
            • Customizing the GUI - Server Side
              • Customizing the GUI
              • Customizing the GUI - Assign New Action
              • Clipboard Formats Configuration
              • Configure the Attach Data Dialog
            • Parameters and Events
              • Parameters
                • JavaBeans parameters
                  • Display Parameters
                    • Structure Templates
                    • Query Properties in Molecule File Formats
                  • Structure Display Parameters
                  • Structure Parameters
                  • Other Parameters
              • Events Fired by JavaBean
                • Action Events
                • Property Change Events
            • Marvin Beans for Java
              • Marvin Beans API Documentation
              • Marvin Beans Examples
                • Examples
                  • Simple Bean
                  • Images
                  • Structure Display Parameters
                  • Structure Templates
                  • Text Box Example
                    • JFileChooser Example
                • Examples
                  • Simple Bean Example
                  • JTable Example
                  • Table View Example
                  • Table View Example with Parameters
                  • JFileChooser Example
                  • Image Generation Using Marvin Beans
                  • Excel Sheet Generation Using Marvin Beans
                  • Installation Guide to jnlp Examples
              • Marvin Beans Frequently Asked Questions
            • Marvin Services
              • Manage Marvin Services
              • Service Implementations
                • Local Services
                • WSDL SOAP RPC Services
                • XML-RPC
                • JSON-RPC
                • HTTP
                • cxcalc integration
                • Chemical Terms Integration
                • Instant JChem Integration
                • JChem For Excel Integration
              • Configuration of Services
              • Calling Services
              • Viewing the Results
            • Java Web Start
        • MarvinView
          • User Guide
            • Getting started
            • How to Use MarvinView Features
              • Importing and Exporting Molecules
              • Editing Molecules
              • Structure Display Options
              • Manipulating the Molecule
              • How to Work with Multipage Molecular Documents
            • Graphical User Interface
              • Dialogs
                • Preferences Dialog
                  • Display
                  • Bonds
                  • Structure Tab
                  • Checkers Tab
                  • Services Tab
                  • Save-Load Tab
                • Edit Source Dialog
                • Table Options
                • About
              • Menus
                • File Menu
                • Edit Menu
                • View Menu
                • Table Menu
                • Structure Menu
                • Tools Menu
                • Pages
                • Help Menu
            • Application Options
              • Options
                • Java VM Options
                • Property Colors
          • Developer's Guide
            • JavaBeans Parameters
              • Display Parameters
              • Structure Display Parameters
              • Structure Parameters
              • 3D and Animation
                • RasMol Scripts
              • Molecule Tables
                • The layout Parameter
                • The param Parameter
                • The celli and celli_j parameters
                • Table View
              • Other Parameters
            • Events Fired by the JavaBean
            • Troubleshooting - MView and JMView Tables
        • Administration guide
          • Installation
          • System requirements
          • Licensing
          • Marvin bundles
        • Marvin Desktop Suite - History of Changes
      • Plexus Connect
        • Plexus Connect - Quick Start Guide
        • Plexus Connect - User Guide
          • Plexus Connect - Log in
          • Plexus Connect - Dashboard
          • Plexus Connect - Exporting Your Data
          • Plexus Connect - Export Templates
          • Plexus Connect - Browsing in Your Data Set
          • Plexus Connect - Selecting Data
          • Plexus Connect - Searching in Your Database
            • Plexus Connect - Structure Search
          • Plexus Connect - Saved Queries
          • Plexus Connect - List Management
          • Plexus Connect - Sorting Data
          • Plexus Connect - Sharing Data with Other Users
          • Plexus Connect - Charts View
          • Plexus Connect - R-group Decomposition
        • Plexus Connect - Administrator Guide
          • Plexus Connect - Authentication
          • Plexus Connect - Sharing Schema Items Among Users
          • Plexus Connect - Business Flags
          • Plexus Connect - Row-level Security
          • Plexus Connect - Shared data sources
          • Plexus Connect - Plexus storage
          • Plexus Connect - Configuration Files
          • Plexus Connect - Simple table
          • Plexus Connect - Getting the Plexus Backend and Frontend Log Files
          • Plexus Connect - Form Editor
          • Plexus Connect - Scripting
            • Plexus Connect - Python Scripting
              • Plexus Connect - Supports Jupyter Notebook
              • Plexus Connect - Jupyter Notebook Advanced Example
              • Plexus Connect - In-View Python Scripting Console
            • Plexus Connect - JavaScript Scripting
          • Plexus Connect - API keys
          • Plexus Connect - Deploying Spotfire Middle Tier solution
        • Plexus Connect - Installation and System Requirements
        • Plexus Connect - Licensing
        • Plexus Connect - Getting Help and Support
          • Plexus Connect - Troubleshooting for Plexus Connect
        • Plexus Connect - FAQ
        • Plexus Connect - Privacy Policy
        • Plexus Connect - Demo Site
        • Plexus Connect - History of Changes
        • Plexus Connect - Schema Refresh Without Restart
        • Plexus Connect - Video Tutorials
      • Trainer Engine
        • Introduction
        • Installation
        • User Guide
        • Configuration
        • History of Changes
        • Known Issues
        • Getting help & support
    • Toolkits and Components
      • AutoMapper
        • AutoMapper User's Guide
      • Calculator Plugins
        • Introduction to Calculator Plugins
        • Calculator Plugins User's Guide
          • Physico-chemical plugins
            • pKa Plugin
            • Major Microspecies Plugin
            • Isoelectric Point Plugin
            • logP Plugin
            • logD Plugin
            • HLB Predictor
            • Solubility Predictor
            • NMR Predictor
            • Tautomer Generation Plugin
            • Stereoisomer Generator Plugin
            • Stereo Analysis - calculating stereo descriptors
            • CNS MPO Score Predictor
            • BBB Score Predictor
            • hERG Predictor
          • Molecular modeling plugins
            • Charge Plugin
            • Orbital Electronegativity Plugin
            • Polarizability Plugin
            • Dipole Moment Calculation Plugin
            • Conformer Plugin
            • 3D Alignment Plugin
            • Molecular Dynamics Plugin
          • Structural property plugins
            • Elemental Analysis Plugin
            • Topological Analysis Plugin
            • Geometrical Descriptors Plugin
            • Polar Surface Area Plugin 2D
            • Molecular Surface Area Plugin 3D
            • Structural Frameworks Plugin
            • Hydrogen Bond Donor Acceptor Plugin
            • Huckel Analysis Plugin
            • Refractivity Plugin
            • Resonance Plugin
          • Markush Enumerator Plugin
            • Markush features
              • R groups
              • Atom lists
              • Bond lists
              • Link nodes
              • Repeating units
              • Position variation bonds
              • Homology Groups
            • Markush functionalities
              • Sequential enumeration
              • Selected part enumeration
              • Calculate library size
              • Random enumeration
              • Valence filter
              • Homology group enumeration
              • Scaffold alignment and coloring
              • Markush code generation
          • Training the Calculator Plugins
            • cxtrain command line tool
            • Training the logD Plugin
            • Training the logP Plugin
            • Training the pKa Plugin
          • cxcalc command line tool
            • cxcalc calculator functions
        • Calculator Plugins Developer's Guide
          • Calculator Plugins Web Services
          • Concurrent plugin API usage
          • Custom Calculator Plugin implementation
          • Integration of third-party calculations into Marvin and JChem
          • Introduction to developers
          • Plugin API usage examples
          • Using Calculator Plugins via API
        • Calculators on AWS Marketplace
          • Getting started
          • Pricing
          • Developer's guide
        • Calculators in Playground
        • Background materials
          • Calculation of partial charge distribution
          • Generate3D
          • Isoelectric point (pI) calculation
          • LogP and logD calculations
          • NMR model prediction
          • pKa calculation
          • Red and blue representation of pKa values
          • Tautomerization and tautomers
          • Validation results
          • Tautomerization and tautomer models of Chemaxon
          • Theory of aqueous solubility prediction
          • The tautomerization models behind the JChem tautomer search
          • Calculators performance reports
        • Calculator Plugins Licensing
        • Calculator Plugins FAQ
        • Calculator Plugins Getting Help and Support
        • Calculator Plugins History of Changes
        • Calculator Plugins System Requirements
      • Chemaxon .NET API
      • Chemaxon Python API
        • Installation
        • Getting Started
        • Limitations
        • History of Changes
        • API Reference
      • Chemaxon Cloud
        • User Guide
          • Guide for Team Members
            • Login
            • Logout
            • Accessing Applications
            • Groups
            • Projects
          • Guide for Team Administrators
            • Managing Team Members
            • Managing Groups
              • Adding Another Team Administrator to the Team
            • Managing Projects
          • Guide for System Administrators
            • Managing a Team Space
            • Managing Applications
            • Identity Federation Guide
              • Login flow diagram
              • Using external Okta as identity provider
                • Using external Okta as identity provider - Customer side
                • Using external Okta as identity provider - Chemaxon side
              • Using Azure AD as identity provider
        • Developer Guide
          • Basic Application Integration
          • Application authentication
          • Application authorization
          • Application and Service Discovery
          • Custom Claims in Okta tokens
          • Chemaxon Cloud Features Catalogue
            • SF-001 Application info
            • SF-002 Health check
            • SF-003 Application icon
            • SF-004 Web endpoints
            • SF-005 Logout
            • SF-006 Deep links
            • SF-007 Form
            • SF-008 Forms of type
            • SF-009 Form types
            • SF-010 Notification Event Types
            • SF-011 Login
        • Glossary
      • Document to Structure
        • Document to Structure User Guide
          • Configuring OSR tools for Document to Structure
        • Document to Structure Developer Guide
        • Document to Structure Format Options
        • Document to Structure Licensing
        • Document to Structure Getting Help and Support
        • Document to Structure History of Changes
          • Document to Structure Migration Guide
      • JChem Base
        • Administration Guide
          • Installation Guide
          • Upgrade Guide
          • System Requirements
          • Multiuser Support
          • Tomcat Configuration
          • Preparing and Running Batch Files and Shell Scripts
        • Developer Guide
          • Introduction for Java applications
          • JChem Chemical Database Concepts
          • File Import Export Tools
          • Modifying Structure Tables
          • R-group Decomposition Developer's Guide
          • Structure Searching
          • Utilities
          • JChem Base API documentation
        • User Guide
          • Query Guide
            • Search types
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              • R-group structures
              • R-group Decomposition User's Guide
              • Searching in Markush targets tables
              • Reaction search
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            • Search options
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              • Tautomer specific search options
              • Tautomer search - Vague bond search - sp-Hybridization
            • Standardization
            • Hit display-coloring
            • Appendix
            • Matching Query - Target Examples
          • jcsearch Command Line Tool
          • jcunique Command Line Tool
          • Homology Groups in Markush Structures
        • FAQ
          • JCB FAQ
          • JChem Base and Cartridge Performance Information
            • Environment Information of Performance Benchmark
        • History of Changes
          • JChem History of Changes from version 1.0.4 to 6.3.4
        • Getting Help and Support
      • JChem Choral
        • Administration Guide
          • Installation Guide
          • Upgrade Guide
          • System Requirements
          • Choral Installation on Amazon Oracle RDS
          • Choral Installation on AWS Oracle RDS and Fargate
          • Choral Upgrade without Downtime
        • Developer Guide
          • API Usage
        • Second Generation Search Engine
        • FAQ and Known Issues
        • Comparison of JChem Choral and JChem Oracle Cartridge
        • Migration guide to Choral from JOC
        • History of Changes
      • JChem Microservices
        • Introduction
        • Administration Guide
          • Installation Guide
          • Upgrade Guide
          • System requirements
          • Licenses
          • Logging and monitoring
          • Architecture
          • Common modules
        • Developer Guide
        • Calculations Web Services
        • DB Web Services
        • IO Web Services
        • Markush Web Services
        • Reactor Web Services
        • Structure Checker Web Services
        • Structure Manipulation
        • Task Manager
        • Second Generation Search Engine
        • JChem Microservices FAQ and Known Issues
        • JChem Microservices History of Changes
      • JChem Oracle Cartridge
        • Administration Guide
          • Installation Guide
          • Upgrade Guide
          • System Requirements
          • Getting Started Guide
          • Migration of JChem Oracle Cartidge
        • Developer Guide
          • JChem Cartridge for Oracle
          • Cartridge API
          • Cartridge API - Deferrred Error Handling
          • Description of parameters
          • External Java interfaces
          • Generic Molecular Descriptor Support
        • FAQ
          • JOC FAQ
          • JChem Cartridge Performance Information
            • JOC Environment Information of Performance Benchmark
        • History of Changes
        • Getting Help and Support
      • JChem PostgreSQL Cartridge
        • Administration Guide
          • Installation Guide
          • Upgrade Guide
          • System Requirements
          • Getting Started
          • Install JPC on non standard PostgreSQL setup
          • JPC HA Installation Guide
          • Upgrade of PostgreSQL database together with JChem PostgreSQL Cartridge
        • Developer Guide
          • API Usage
          • JPC perf_out parameters
          • Deprecated API
          • Custom Structure Checker and Fixer in JPC
          • Citus Distibuted JChem PostgreSQL Cartridge
          • JDBC Caution
        • Second Generation Search Engine
        • FAQ and Known Issues
        • History of Changes
        • Getting Help and Support
        • Comparison of JChem PostgreSQL Cartridge and JChem Oracle Cartridge
        • Migration Guide
          • Migration guide to JPC from JOC
      • JKlustor
        • What is JKlustor
        • Clustering methods
          • Hierarchical clustering
            • MCS search and LibMCS
              • Maximum Common Substructure (MCS) search
              • Library MCS (LibMCS) clustering
              • LibMCS licensing
            • Ward clustering
          • Non-hierarchical clustering
            • Bemis-Murcko clustering
            • Diverse Set Selection
            • Jarvis-Patrick clustering
            • K-means clustering
            • Sphere Exclusion clustering
            • Comparing libraries with Compr
        • CreateView
        • JKlustor History of Changes
        • JKlustor licensing
      • Markush Tools
        • Markush Composer
        • Markush Enumeration
      • Marvin JS
        • User Guide
          • Getting Started
          • Editor Overview
            • Editor Canvas
            • Dialogs
              • Abbreviated Groups Dialog
                • Default Abbreviated Group List
              • Atom Properties Dialog
              • Atom Query Properties Dialog
              • Attached Data Dialog
              • Bond Properties Dialog
              • Export Dialog
              • Import Dialog
              • Periodic Table Dialog
              • Pseudo Atom Dialog
              • R-group Dialog
              • R-logic Dialog
              • Set Box Color Dialog
              • S-group Dialog
              • Text Dialog
              • View Settings Dialog
            • Toolbars
              • Atom Toolbar - Right Toolbar
              • General Toolbar - Top Toolbar
              • Template Toolbar - Bottom Toolbar
              • Tools Toolbar - Left Toolbar
            • Context Menus
              • Abbreviated Group Context Menu
              • Atom Context Menu
              • Bond Context Menu
              • Empty Space Context Menu
              • Graphical Objects Context Menu
              • R-group Label Context Menu
              • Selection Context Menu
              • S-group Context Menu
          • Drawing and Editing Options
            • Abbreviations
            • Atom
            • Atom Mapping
            • Bond
            • Chains
            • Copy Structures
            • Graphical Objects
            • Groups
            • Radicals and Lone Pairs
            • Reaction
            • Reaction Mechanism
            • R-group Representation and Editing Options
            • Rotating in 2D
            • Snapped Objects
            • Structure Templates
            • Peptides
            • Text Editing
          • Feature Overview Pages
            • Markush Structures
            • Query Structures
            • Stereochemistry
            • Reactions and Mechanisms
            • Representation of JChem Base Query Functions
          • Keyboard Shortcuts
        • Developer Resources
          • Marvin JS Installation and System Requirements
          • Embedding Marvin JS
          • Extending Functionalities with Web Services
          • Troubleshooting
          • Third Party Licenses
          • Marvin JS Web Services
        • History of Changes
        • Frequently Asked Questions
        • Video Tutorials
        • Comparison of Marvin JS and MarvinSketch Feature Sets
      • Marvin
        • Comparison with Marvin JS and Marvin Sketch
        • Shortcuts and tricks
        • Marvin with CLI
      • Molconvert
        • User guide
      • Name to Structure
        • Name to Structure User Guide
          • Custom Dictionary in Name Import
          • Custom Webservice in Name Import
        • Name to Structure Developer Guide
        • Name to Structure Format Options
        • Name to Structure Getting Help and Support
        • Name to Structure History of Changes
        • Name to Structure Licensing
      • Reactor
        • Reactor User's Guide
          • Introduction to Reactor
            • Reactor Features
          • Reactor Getting Started
            • Reactor in Step-by-Step
          • Reactor Concepts
            • Virtual Library Design
            • Smart reactions
              • Stereoselectivity
              • Regioselectivity
          • Reactor Examples
            • Simple examples
            • Multiple reactants
            • Reactivity rules
            • Reactor usage examples
            • Selectivity rules
          • Working with Reactor
            • Specifying Reactions
              • Drawing a Reaction Scheme
                • Introducing the Reaction Scheme
                • Advanced Reaction Scheme Drawing
              • Reaction Library
            • Specifying Reactants
            • Reaction Mapping
              • Orphan atoms
              • Other reaction mapping styles
            • Reaction Rules
              • Exclude Rule
              • Reactivity Rule
              • Selectivity Rule
            • Reactant Combinations
            • Running Reactor
            • Reactor Interfaces
              • Reactor Application
                • Add reaction file
                • Specify reactants
                • Set runtime options for reaction processing
                  • General options
                  • Advanced options
                  • Synthesis code options
                  • Property Copy
                • Run the reaction and generate products in batch mode
              • Reactor Command-line Application
                • Using the react command-line interface
                • Options - react CLI
                  • Reaction file - React CLI
                  • Input (Reactants) - React CLI
                  • Reactant processing modes - React CLI
                  • Output - React CLI
                  • Reaction rules - React CLI
                  • Product related options
                  • Reporting options
                  • Mapping related options
                  • Special options
                  • Ratio - React CLI
                  • Reverse reaction - React CLI
              • Reactor in Instant JChem
              • Reactor in JChem for Excel
                • JCReactProductStructure function
                  • Prerequisites of JCReactProductStructure function
                  • Insert JCReactProductStructure function
                  • Populate cells with JCReactProductStructure results
                  • Example on multiple product as result
                • JCReactReactionStructure function
                  • Prerequisites - JCReactReactionStructure
                  • Insert JCReactReactionStructure function
                  • Populate cells with JCReactReactionStructure result
                • Reactor Examples inJChemforExcelUsage Reactor
              • Reactor in KNIME
                • Quick help
              • Reactor in Pipeline Pilot
              • API, Web Services
              • Glossary
                • Isotopes
                • Manual selection
                • Output file format
                • Product list
                • Ratio
                • Reaction File - Reaction Equation
                • Reaction stereo
                • Reversed reaction
                • Standardization in Reactor
                • Standard Properties in the Chemaxon Reaction Library
        • Reactor FAQ
        • Reactor Licensing
        • Reactor Getting Help and Support
        • Reactor History of Changes
        • Reactor Configuration Files
      • Screen
        • Introduction to Virtual Screening
        • ScreenMD
        • Screen3D
        • Screen Developer Guide
        • Screen History of Changes
        • Screen licensing
      • Standardizer
        • Standardizer User's Guide
          • Standardizer Introduction
            • Standardizer in a Nutshell
            • Why Use Standardizer
          • Standardizer Getting Started
            • Standardization in Step-by-Step
            • Quick Help on Configuration Design
          • Standardizer Concepts
            • Action
            • Standardizer Configuration
            • Standardizing Molecules
            • Typical Workflows
          • Working with Standardizer
            • Standardizer Actions
              • Add Explicit Hydrogens
              • Alias to Atom
              • Alias to Group
              • Aromatize
              • Clean 2D
              • Clean 3D
              • Clear Isotopes
              • Clear Stereo
              • Contract S-groups
              • Convert Double Bonds
              • Convert Pi-metal Bonds
              • Convert to Enhanced Stereo
              • Create Group
              • Dearomatize
              • Disconnect Metal Atoms
              • Expand S-groups
              • Expand Stoichiometry
              • Map
              • Map Reaction
              • Mesomerize
              • Neutralize
              • Rearrange Reaction
              • Remove Absolute Stereo
              • Remove Atom Values
              • Remove Attached Data
              • Remove Explicit Hydrogens
              • Remove Fragment
              • Remove R-group Definitions
              • Remove Stereo Care Box
              • Replace Atoms
              • Set Absolute Stereo
              • Set Hydrogen Isotope Symbol
              • Strip Salts
              • Tautomerize
              • Transform
              • Ungroup S-groups
              • Unmap
              • Wedge Clean
              • Remove
              • Standardizer Transform
              • Custom Standardizer Actions
              • Remove Solvents
            • Creating a Configuration Standardizer
            • Interfaces Standardizer
              • Standardizer Application
                • Setting up Profiles
              • Standardizer Editor
              • Standardizer Command-line Application
              • Standardizer JChem Base
              • Standardizer JChem for Excel
              • Standardizer Instant JChem
              • Standardizer JChem Cartridge
              • Standardizer KNIME
              • Standardizer Pipeline Pilot
            • Standardizer File Formats
        • Standardizer Developer's Guide
        • Standardizer Installation and System Requirements
        • Standardizer Licensing
        • Standardizer Getting Help and Support
        • Standardizer History of Changes
      • Structure Checker
        • Structure Checker User's Guide
          • Introduction
            • Structure Checker in a Nutshell
          • Structure Checker Getting Started
          • Structure Checker Concepts
            • Checkers
            • Fixers
            • Structure Checking of Molecules
          • Working with Structure Checker
            • Checker List
              • Abbreviated Group
              • Absent Chiral Flag
              • Absolute Stereo Configuration
              • Alias
              • Aromaticity Error
              • Atom Map
              • Atom Query Property
              • Atom Value
              • Attached Data
              • Bond Angle
              • Bond Length
              • Bond Topology
              • Brackets
              • Chiral Flag
              • Chiral Flag Error
              • Circular R-group Reference
              • Coordination System Error
              • Covalent Counterion
              • Crossed Double Bond
              • Custom Checkers and Fixers
              • Double Bond Stereo Error
              • EZ Double Bond
              • Empty Structure
              • Explicit Hydrogen
              • Explicit Lone Pairs
              • Incorrect Tetrahedral Stereo
              • Isotope
              • Metallocene Error
              • Missing Atom Map
              • Missing R-group Reference
              • Molecule Charge
              • Multicenter
              • Multicomponent
              • Multiple Stereocenter
              • Non-standard Wedge Scheme
              • Non-stereo Wedge Bond
              • OCR Error
              • Overlapping Atoms
              • Overlapping Bonds
              • Pseudo Atom
              • Query Atom
              • Query Bond
              • Racemate
              • Radical
              • Rare Element
              • R-atom
              • Reacting Center Bond Mark
              • Reaction Map Error
              • Relative Stereo
              • R-group Attachment Error
              • R-group Bridge Error
              • Ring Strain Error
              • Solvent
              • Star Atom
              • Stereo Care Box
              • Stereo Inversion Retention Mark
              • Straight Double Bond
              • Substructure
              • Three Dimension 3D
              • Unbalanced Reaction
              • Unused R-group Reference
              • Valence Error
              • Valence Property
              • Wiggly Bond
              • Wiggly Double Bond
              • Atropisomer (deprecated)
              • Wedge Error (deprecated)
              • R-group Reference Error (discontinued)
            • Creating a Configuration Structure Checker
            • Interfaces of Structure Checker
              • Structure Checker in MarvinSketch
              • Structure Checker Application
              • Structure Checker Editor
              • Structure Checker Command Line Application
              • JChem Cartridge and Structure Checker
        • Structure Checker Developer's Guide
          • Introduction to Structure Checker API
          • Classes, interfaces and configuration
          • Implementing a new Structure Checker
          • Create Graphical User Interface for Checker Options
          • Implementing Fixers
        • Structure Checker Installation and System Requirements
        • Structure Checker Licensing
        • Structure Checker Getting Help and Support
        • Structure Checker History of Changes
      • Structure to Name
        • Structure to Name User Guide
        • Structure to Name Developer Guide
        • Structure to Name Format Options
        • Structure to Name Licensing
        • Structure to Name Getting Help and Support
        • Structure to Name History of Changes
    • Third-Party Integration
      • JChem for Office
        • Administration Guide
          • Installation Guide
            • Before Using
            • Installation
              • How to Check the Bit-version of MS Office
                • Microsoft Office 2013, 2016 and 2019
              • Silent Installation
            • Licensing of JChem for Office
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          • Upgrade and Uninstall Guide
          • System Requirements
        • User Guide
          • JChem for Excel User's Guide
            • JChem for Excel Ribbon
              • Standard Menu
              • Advanced Menu
            • Working with Structures in Excel
              • Add a Structure to a Cell
              • Edit a Structure in a Cell
              • Edit Structures in the Task Pane
              • Resize Structures
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              • Show and Hide Structures
              • Show and Hide Structures and Structure IDs
              • Insert Single Structures
              • Open Structure Files
              • Delete Structures from a Selected Range
              • Save Single Structure to a File
              • Print Structures
              • Copy and Paste with JChem for Excel
                • Inside Excel
                  • Copy Structures with or without Data
                  • Exclude Hidden Rows
                • To External Applications from JChem for Excel
                  • Copy and Paste with IDs
                  • To External Structure Editors
                  • Copy and Paste Single Structures with Keyboard Shortcuts in JChem for Excel
                • From External Applications to JChem for Excel
                  • From External Structure Editors to JChem for Excel
                  • From Instant JChem to JChem for Excel
              • Convert from Structures
                • Convert Structures to Images
                • Convert Structures to Text
              • Convert to Structures
                • Convert Images to Structures
                • Convert Text to Structures
              • Convert ISIS, ChemDraw, Accord, and Insight for Excel Files to JChem for Excel Files
                • JChem for Excel File Converter Action
                • JChem for Excel File Converter Context Menu Item
                • JChem for Excel File Converter Tool
              • Calculations with Third-Party Services
              • Specify External Image and Name Services
            • Importing from Databases in JChem for Excel
              • Manage Connections
                • Add an Oracle Connection in JChem for Excel
                • Add a MySQL Connection in JChem for Excel
                • Add an MSSQL Connection in JChem for Excel
                • Add a PostgreSQL Connection in JChem for Excel
                • Add a JChem Web Services Connection in JChem for Excel
                • Favorite Entities in JChem for Excel
                • Edit and Delete Connections in JChem for Excel
              • Import from Database in JChem for Excel
                • Import from Database-Database Tab
                • Import from Database-Query Tab
                • Import from Database-Columns Tab
                • Import from Database-Rows Tab
                • Import from Database-Progress Tab
              • Import from IJC Database in JChem for Excel
                • Import from IJC Database-Source Tab
                • Import from IJC Database-Columns Tab
                • Import from IJC Database-Progress Tab
              • Import from Database by IDs
            • Resolve ID
              • Resolve IDs into Structures
              • Resolve CompReg IDs into Structures
            • Import from File
              • Import File
                • Import File-File Tab
                • Import File-Columns Tab
                • Import File-Progress Tab
              • Import from File by IDs
              • Import with Document to Structure in JChem for Excel
            • Export to File
            • Share Excel Files
              • Co-authoring
              • Save to Share
            • R-group Decomposition in JChem for Excel
              • R-group Decomposition-Select Query and Target Tab
              • R-group Decomposition-Options Tab
              • R-group Decomposition-Run Tab
            • SAR Table Generation
            • Structure Filter
              • Filtering Options
              • Work with Filter Results
              • Clone Results to a New Sheet
            • Options in JChem for Excel
              • General Options in JChem for Excel
              • Database Connection Options
              • Formatting Options
              • Licensing Options in JChem for Excel
              • File Import Options in JChem for Excel
              • IJC Import Options in JChem for Excel
              • File Export Options in JChem for Excel
              • Printing Options in JChem for Excel
              • Structure Sheet Options
              • Image Conversion Options
              • Structure Display Options in JChem for Excel
              • Structure Editor Options in JChem for Excel
              • Event Handling Options in JChem for Excel
              • Actions
              • Functions in JChem for Excel
            • Custom Chemical Functions in JChem for Excel
              • Use Custom Chemical Functions
              • Functions Reference
                • Normal
                  • Charge in JChem for Excel
                  • Chemical Terms in JChem for Excel
                  • Dissimilarity
                  • Drug Discovery Filtering in JChem for Excel
                  • Elemental Analysis in JChem for Excel
                  • Geometry in JChem for Excel
                  • Hydrogen Bond Donor-Acceptor in JChem for Excel
                  • Isomers in JChem for Excel
                  • Naming
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                  • Solubility
                  • Tautomers in JChem for Excel
                  • Topology Analysis in JChem for Excel
                    • Ring-Based
                    • Path-Based
                    • Distance-Based
                    • Refractivity
                • Structure in JChem for Excel
                  • R-group Decomposition Functions
                  • Reactor as JChem for Excel Functions
                  • Markush Enumeration in JChem for Excel
                  • Reactions in JChem for Excel
                  • 2D and 3D Clean
                  • MCS Structure
                  • Structural Framework
                  • Structure Checker in JChem for Excel
                  • Standardizer in JChem for Excel
                  • JCStructure
                  • JCIDSYSStructure
                • Image
            • User Interface Customization in JChem for Excel
              • Customizing the Ribbon
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              • Actions Reference
                • Conversions
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                • Structure Transformation
            • Checking DirectX Information
          • JChem for Office User's Guide
            • JChem Ribbon
              • Customizing the Ribbon of JChem for Office
            • Working with Structures
              • Add a Structure
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              • Redirecting Other Vendors' OLE Objects
              • Open Structure Files in JChem for Office
              • Copy and Paste
                • Inside MS Office Applications
                  • Copy from JChem for Excel
                    • Copy and Paste Single Structures with Keyboard Shortcuts
                    • Copy and Paste Tables from Excel
                • To External Applications
                  • Copy and Paste Single Structures
                • From External Applications
                  • From Instant JChem to JChem for Office
                  • From External Structure Editors
                    • Convert to SMILES from Structure
                    • Convert from SMILES to Structure
                    • Convert from Text to Structure
            • Importing from Databases in JChem for Office
              • Manage Connections in JChem for Office
                • Add an Oracle Connection in JChem for Office
                • Add a MySQL Connection in JChem for Office
                • Add an MSSQL Connection in JChem for Office
                • Add a PostgreSQL Connection in JChem for Office
                • Add a JChem Web Services Connection in JChem for Office
                • Favorite Entities in JChem for Office
                • Edit and Delete Connections in JChem for Office
              • Import from Database in JChem for Office
                • Import from Database in JChem for Office-Database Tab
                • Import from Database in JChem for Office-Query Tab
                • Import from Database in JChem for Office-Columns Tab
                • Import from Database in JChem for Office-Rows Tab
                • Import from Database in JChem for Office-Progress Tab
              • Import from IJC Database
                • Import from IJC Database in JChem for Office-Source Tab
                • Import from IJC Database in JChem for Office-Columns Tab
                • Import from IJC Datebase in JChem for Office-Rows Tab
                • Import from IJC Database in Jchem for Office-Progress Tab
            • Import from File in Jchem for Office
              • Import File in JChem for Office
                • Import File in JChem for Office-File Tab
                • Import File in Jchem for Office-Columns Tab
                • Import File in Jchem for Office-Rows Tab
                • Import File in JChem for Office-Progress Tab
              • Import with Document to Structure
            • Options in JChem for Office
              • General Options in JChem for Office
              • Image Formatting
              • Structure Display in JChem for Office
              • Structure Editor in JChem for Office
              • Calculations in JChem for Office
              • File Import in JChem for Office
              • IJC Import
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              • Data Mapping Limitations Options
              • Event Handling
            • Properties in JChem for Office
              • Add Properties to a Document
              • Reference
                • Charge in JChem for Office
                • Drug Discovery Filtering
                • Elemental Analysis
                • Geometry in JChem for Office
                • Hydrogen Bond Donor-Acceptor
                • Isomers in JChem for Office
                • IUPAC Naming
                • Markush Enumeration in JChem for Office
                • Protonation and Partitioning
                • Structure
                • Tautomers in JChem for Office
                • Topology Analysis
            • Switching JChem for Office to Lite Mode
            • User Interface Customization in JChem for Office
          • JChem for Office Lite User's Guide
            • Copying, Pasting, and Editing Structures in JChem for Office Lite
            • Context Menu in JChem for Office Lite
              • Structure Renderer Options in JChem for Office Lite
              • Structure Editor Options in JChem for Office Lite
            • Use Marvin with JChem for Office Lite
          • JChem for Office Known Issues
            • Issues Detailed
          • Troubleshooting
            • Manually Enabling JChemExcel Functions
            • Disable and Re-enable JChem for Office Add-Ins
            • No Help Available for JChem for Excel Functions
          • Troubleshooting - JChem for Office
            • Structures are not displayed in Excel cell
            • JChem for Office Tutorial Videos
            • Enable JChemExcel.Functions add-in after it gets disabled
            • Structure rendering issues when moving the Excel window between different screens
            • How to collect event logs
            • Information to be sent for bug investigation
            • Logfiles to be sent for bug investigation
            • CAS conversion and license key do not work
          • Diagnostic Tool
        • History of Changes
      • KNIME Nodes
        • Administration
        • Licensing
        • Getting Help and Support
        • History of Changes
      • Pipeline Pilot Components
        • Administration
        • Product Presentation
        • Getting Help and Support
        • Licensing
        • History of Changes
    • Cross-Product Documentation
      • Chemaxon Configuration Folder
      • Chemical Fingerprints
        • Extended Connectivity Fingerprint ECFP
        • Chemical Hashed Fingerprint
        • Pharmacophore Fingerprint PF
        • Reaction Fingerprint RF
        • MACCS-166 Fingerprint
        • Fingerprint and descriptor generation - GenerateMD
        • Pharmacophore perception - PMapper
        • Chemical Fingerprints licensing
      • Chemical Terms
        • Available Functions
          • Functions by Categories
          • Functions in Alphabetic Order
          • Chemical Terms functions in alphabetic order
          • Notes on Chemical Terms functions
        • Chemical Terms Getting Help and Support
        • Chemical Terms Getting Started
        • Chemical Terms Introduction
        • Products using Chemical Terms
          • Chemical Terms Evaluator
            • Evaluator Examples
          • Instant JChem CT
          • JChem Base CT
          • Chemical Terms - JChem Cartridge
          • Chemical Terms - JChem for Excel
          • Chemical Terms - Reactor
          • Chemical Terms - KNIME
          • Chemical Terms - Pipeline Pilot
        • The Chemical Terms Language
          • Language Elements
          • Expression Syntax
          • Predefined Functional Groups and Named Molecule Groups
          • Initial Scripts
          • Input Contexts
          • Chemical Terms Configuration
          • Examples
            • Evaluator and JChem Cartridge Examples
            • Reactor Examples CT
            • Search Filter Examples
        • Usage examples CT
          • Basic Calculations
          • Search Filters
          • Reaction Processing
          • Markush Enumeration CT
      • File Formats
        • Basic export options
        • Compression and Encoding
          • Base64
          • GZIP
        • Document formats
          • Marvin Documents - MRV
            • MRV Export Options
            • Schema and Validation
          • Marvin Documents - CXON
          • ISISDraw sketch file - SKC
            • Features imported from SKC files
            • Features exported to SKC format
          • ChemDraw sketch file - CDX, CDXML
            • Features imported from CDX and CDXML files
            • Features exported to CDX
        • Graphics Formats
          • Image Export in Marvin
            • JPEG
            • BMP
            • PNG
            • EMF
            • PDF
            • SVG
            • TIFF
            • EPS
          • Export to POV-Ray
          • Image Import in Marvin
        • Molecule file conversion with Molconvert
        • Molecule Formats
          • CML
            • CML Export Options
          • MDL MOL files
            • MDL MOLfiles, RGfiles, SDfiles, Rxnfiles, RDfiles formats
            • Chemaxon specific information in MDL MOL files
            • MOL file compression
            • MDL MOL Import and Export Options
            • Default valence of metal atoms
          • Daylight SMILES related formats
            • SMILES
            • SMARTS
            • SMILES and SMARTS import and export options
          • Chemaxon SMILES extensions
            • Chemaxon Extended SMILES and SMARTS - CXSMILES and CXSMARTS
            • CXSMILES and CXSMARTS import and export options
            • Chemaxon SMILES Abbreviated Group
          • IUPAC InChI, InChIKey, RInChI and RInChIKey
            • InChi and InChiKey export options
          • Name
          • Sequences - peptide, DNA, RNA
            • Peptide import and export options
          • FASTA file format
            • FASTA import options
          • Protein Data Bank (PDB) file format
            • Standard PDB residues
            • PDB import and export options
          • Tripos SYBYL MOL and MOL2 formats
            • Tripos Mol2 format
            • Tripos SYBYL MOL format
          • XYZ format
            • XYZ import and export options
          • Gaussian related file formats
            • Gaussian Cube format
            • Gaussian Cube import and export options
            • Gaussian input-output format
          • Markush DARC format - VMN
            • VMN peptide import option
          • CSV
      • Input and Output System
        • Supported formats
        • Input and Output System - Import
        • Input and Output System - Export
        • Image generation
        • Importing and Exporting molecule properties
        • Molecule converter
        • Integrating your own format
      • License Management
        • License Installation
          • Installing to Desktops
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          • License Server Configuration
          • Licensing Applets
          • Licensing via Java Web Start
          • Setting environment variables
        • License Management FAQ
        • About Chemaxon Licensing
        • Licensing Prior Version 5.0
        • License Report
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      • Long-Term Support (LTS)
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      • Notice about CAS Registry Numbers®
      • Public Repository
      • Scientific Background
        • Aromatization
          • Methods
          • Differences between the Basic and General aromatization methods
          • Aromatization of query structures
          • Dearomatization
        • Stereochemistry
          • Parity
          • Tetrahedral Stereo
          • Cis-trans stereo
          • Axial stereoisomerism - atropisomerism
        • Valence Calculations
          • Alkali metals and Hydrogen
          • Alkaline earth metals
          • Transition metals, Lanthanoids and Actinoids
          • Boron group
          • Carbon group
          • Nitrogen group
          • Oxygen group
          • Halogens
          • Noble gases
          • Aromatic systems
          • Special cases - abbreviations query properties
        • Atom-by-Atom Search
      • Structure Representation
        • Structure Representation - Class Representation
          • MolAtom
          • MolBond
          • Molecule Graph
          • R-group structures
            • Implementation
          • Representation of reactions
          • S-groups
          • Examples for Molecule representation
        • Aromaticity
          • Converting structure from Kekule form to aromatic form
          • Differences between the basic and general methods
          • Converting structure from aromatic form to Kekule form
        • Implicit, Explicit and Query Hydrogens
          • Converting explicit Hydrogens to implicit
          • Converting implicit Hydrogens to explicit
          • Query Hydrogens
        • Assigning stereochemistry descriptors
          • CIP Stereo chemistry
          • Stereoisomers around double bonds
            • Cis Trans stereoisomers in 0 Dimension
            • Cis Trans stereoisomers in 2 or 3 Dimensions
            • EZ stereoisomers
          • Parity information
            • Parity information in 0 Dimension
            • Parity information in 2 or 3 Dimensions
          • Chirality
        • Cleaning options
        • Deprecated and Removed Methods
          • All of the Deprecated and Removed Methods
          • Methods Deprecated or Removed in version 14.7.7.0
          • Methods Deprecated or Removed in version 6.3
          • Methods Deprecated or Removed in version 6.2
          • Methods Deprecated or Removed in version 6.1
        • Relative configuration of tetrahedral stereo centers
        • Iterator Factory
        • Atom and bond-set handling
        • Graphic object handling
      • Supported Java Versions
    • Legal
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      • BioEddie
        • BioEddie Developer's Guide
        • BioEddie User's Guide
          • BioEddie Interface Overview
            • Toolbar of BioEddie
            • Monomer Library Panel
            • Dialogues
          • Working in the Editor
            • Import to BioEddie
            • Editing molecules in BioEddie
              • Selection of molecule parts
              • Create a bond
              • Deleting molecule parts
              • Add - Insert - Replace - Delete a monomer
              • Moving molecules on the canvas
              • Clean
              • Zooming
              • Editing domains
            • Annotations
            • Monomer Library
              • Load library
              • Grouping monomers
              • Library Manager
          • Saving a structure
          • Replace tool
        • BioEddie System Requirements
        • BioEddie Licensing
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        • BioEddie History of Changes
      • Biomolecule Toolkit
        • Biomolecule Toolkit Administrator's Guide
          • Biomolecule Toolkit Deployment Guide
            • Biomolecule Toolkit Docker Setup
              • Running the Biomolecule Toolkit Container
            • Biomolecule Toolkit WAR Deployment
              • Download Package
              • System Environment Setup
              • License Files
              • Tomcat Deployment
            • Biomolecule Toolkit System Requirements
            • Database Setup for Biomolecule Toolkit
            • Schema Initialization
        • Biomolecule Toolkit User's Guide
          • Biomolecule Toolkit Library Manager
          • Biomolecule Toolkit Query Guide
            • Sequence Search Types
            • Query Features BMT
            • Sequence Search Options
            • Additional Data Handling
        • Biomolecule Toolkit API documentation
        • Biomolecule Toolkit History of Changes
      • Document to Database
        • Document to Database Administration Guide
        • Document to Database System Requirements
        • Document to Database Licensing
        • Document to Database Getting Help and Support
        • Document to Database History of Changes
      • Fragmenter
      • JChem Neo4j Cartridge
        • JChem Neo4j Cartridge History of Changes
      • JChem Web Services Classic
        • JChem Web Services Classic History of Changes
      • Markush Overlap
      • MarvinSpace
        • MarvinSpace User's Guide
          • What is MarvinSpace
          • MarvinSpace GUI Overview
            • Canvas - MarvinSpace
            • Menu bar
              • File Menu
              • Edit Menu
              • Display Menu
                • Draw Type Submenu
                • Color Type Submenu
                • Quality Submenu
                • Depth Cue menu item
                • Anti-alias menu item
                • Options Menu
                  • Visualizers Tab
                  • Surface Tab
                  • Secondary Structure Tab
                  • Colors Tab
                  • Controls Tab
              • Show Menu
                • Labels submenu
                • Surface submenu
                • Secondary Structure menu item
              • Animation Menu
              • Help Menu
            • Pop-up menu
            • Toolbar
              • Controls
              • Monitors
              • Pharmacophore models
              • Display tools
            • Selection Panel
          • How to use MarvinSpace features
          • MarvinSpace Operations
        • MarvinSpace Developer's Guide
          • MarvinSpace parameters
            • Scene parameters
            • Action parameters
            • Ligand parameters
            • Macromolecular parameters
            • Water parameters
            • Ion parameters
            • Pharmacophore parameters
            • Surface parameters
            • Secondary Structure parameters
          • Step-by-step example - displaying atom properties
          • Step-by-step code examples
          • Surface coloring in MarvinSpace
        • MarvinSpace History of Changes
      • Metabolizer