<?xml version="1.0" encoding="UTF-8"?>
<!-- Chemical Terms configuration file sample -->

<EvaluatorConfiguration Version="0.1">

	<Plugins>
		<Plugin ID="bemisMurcko" Class="BemisMurckoPlugin" JAR="BemisMurckoPlugin.jar">
			<Param Name="type" Value="structure"></Param>
			<ReturnType>Molecule</ReturnType>
			<Category>Frameworks</Category>
			<Description>
				<![CDATA[calculates the Bemis-Murcko framework of the molecule]]>
			</Description>
			<ReturnValue>
				<![CDATA[the Bemis-Murcko framework of the molecule]]>
			</ReturnValue>
			<Parameters>
				<![CDATA[-]]>
			</Parameters>
			<MoleculeContextExample>
				<![CDATA[<code>bemisMurcko()</code> returns the Bemis-Murcko framework of the input molecule]]>
			</MoleculeContextExample>
			<ReactionContextExample>
				<![CDATA[<code>bemisMurcko(reactant(0))</code> returns the Bemis-Murcko framework of the first reactant <code>bemisMurcko(product(1))</code> 
				returns the Bemis-Murcko framework of the second product]]>
			</ReactionContextExample>
		</Plugin>
		<Plugin ID="bemisMurckoAtomCount" Class="BemisMurckoPlugin" JAR="BemisMurckoPlugin.jar">
			<Param Name="type" Value="atomcount"></Param>
			<ReturnType>int</ReturnType>
			<Category>Frameworks</Category>
			<Description>
				<![CDATA[calculates the number of atoms in the Bemis-Murcko framework of the molecule]]>
			</Description>
			<ReturnValue>
				<![CDATA[the number of atoms in the Bemis-Murcko framework of the molecule]]>
			</ReturnValue>
			<Parameters>
				<![CDATA[-]]>
			</Parameters>
			<MoleculeContextExample>
				<![CDATA[<code>bemisMurckoAtomCount()</code> returns the number of atoms in the Bemis-Murcko framework of the input molecule]]>
			</MoleculeContextExample>
			<ReactionContextExample>
				<![CDATA[<code>bemisMurckoAtomCount(reactant(0))</code> returns the number of atoms in the Bemis-Murcko framework of the 
				first reactant <code>bemisMurckoAtomCount(product(1))</code> returns the number of atoms in the Bemis-Murcko framework of the second product]]>
			</ReactionContextExample>
		</Plugin>
		<Plugin ID="bemisMurckoBondCount" Class="BemisMurckoPlugin" JAR="BemisMurckoPlugin.jar">
			<Param Name="type" Value="bondcount"></Param>
			<ReturnType>int</ReturnType>
			<Category>Frameworks</Category>
			<Description>
				<![CDATA[calculates the number of bonds in the Bemis-Murcko framework of the molecule]]>
			</Description>
			<ReturnValue>
				<![CDATA[the number of bonds in the Bemis-Murcko framework of the molecule]]>
			</ReturnValue>
			<Parameters>
				<![CDATA[-]]>
			</Parameters>
			<MoleculeContextExample>
				<![CDATA[<code>bemisMurckoBondCount()</code> returns the number of bonds in the Bemis-Murcko framework of the input molecule]]>
			</MoleculeContextExample>
			<ReactionContextExample>
				<![CDATA[<code>bemisMurckoBondCount(reactant(0))</code> returns the number of bonds in the Bemis-Murcko framework of the 
				first reactant <code>bemisMurckoBondCount(product(1))</code> returns the number of bonds in the Bemis-Murcko framework of the second product]]>
			</ReactionContextExample>
		</Plugin>
	</Plugins>

</EvaluatorConfiguration>
