Mercury LTS
  • Standalone Applications
    • BioEddie
      • BioEddie Developer's Guide
      • BioEddie User's Guide
        • BioEddie Interface Overview
          • Toolbar of BioEddie
          • Monomer Library Panel
          • Dialogues
        • Working in the Editor
          • Import to BioEddie
          • Editing molecules in BioEddie
            • Selection of molecule parts
            • Create a bond
            • Deleting molecule parts
            • Add - Insert - Replace - Delete a monomer
            • Moving molecules on the canvas
            • Clean
            • Zooming
            • Editing domains
          • Annotations
          • Monomer Library
            • Load library
            • Grouping monomers
            • Library Manager
        • Saving a structure
        • Replace tool
      • BioEddie System Requirements
      • BioEddie Licensing
      • BioEddie Getting Help and Support
      • BioEddie History of Changes
    • Chemaxon Assay
      • User guide for Assay
        • Processed data upload
        • Template File Usage
      • Administration guide for Assay
      • Assay Release Notes
        • Manual for Migration from Procedure to Protocol
    • ChemCurator
      • ChemCurator Getting Help and Support
      • ChemCurator History of Changes
      • ChemCurator Installation and System Requirements
      • ChemCurator Licensing
      • ChemCurator User's Guide
      • Command-Line Mode
      • Integration Server Administrator Guide
    • Chemicalize
      • Introduction to Chemicalize
      • Getting started with Chemicalize
      • Chemicalize User's Guide
      • Subscription management
      • Technical issues & Troubleshooting
      • Chemicalize Frequently Asked Questions
      • Getting Help & Support
    • ChemLocator
      • ChemLocator Installation
        • Hardware Requirements
        • Software requirements
        • Prerequisites: Docker
        • Prerequisites: Azure AD
        • Installation Guide
        • Uninstallation
      • ChemLocator Configuration
        • First-time configuration
        • Indexing
      • ChemLocator Upgrade
      • ChemLocator Overview
        • File Formats
      • ChemLocator Search
        • Supported Browsers
      • ChemLocator Migration
      • How To
      • Troubleshoot
      • Changelog
    • cHemTS
      • User Guide - cHemTS
        • Login in Compliance Checker
        • Single Check
        • File check
      • Admin Guide - cHemTS
        • Install Guide - cHemTS
          • System Requirements - cHemTS
          • Installing - cHemTS
        • Configuring cHemTS
        • Administration GUI - cHemTS
        • Integration API
      • cHemTS Getting Help and Support
      • cHemTS History of Changes
        • cHemTS - Software
        • cHemTS - Knowledge Base
    • Compliance Checker
      • User Guide - Compliance Checker
        • Login in Compliance Checker
        • Single Check
        • File check
      • Admin Guide - Compliance Checker
        • Install Guide - Compliance Checker
          • System Requirements - Compliance Checker
          • Installing Compliance Checker
        • Configuring Compliance Checker
        • Administration GUI
          • Login as Administrator
          • Update the regulations
          • System monitor
          • Category group editor
          • User-defined category editor
          • History
            • Database update history
            • File check history
            • Single check history
          • Report template editor
        • Integration API
        • Workflow tools
      • Compliance Checker Getting Help and Support
      • Compliance Checker History of Changes
        • Compliance Checker - Software
        • Compliance Checker - Knowledge Base
      • Try out!
    • Compound Registration
      • Quick Start Guide
        • Register a new compound
        • Register a new lot
        • Register a new compound reviewing matches
        • Dealing with failed submissions
        • Register compounds without structures
      • Compound Registration User's Guide
        • Overview
        • Compound Registration Abbreviations
        • Definitions of Terms
        • Compound Registration Introduction
        • Login
        • Dashboard page
        • Autoregistration
          • Registration page
          • Register a Virtual Compound
        • Bulk Upload
          • Upload compounds
            • Upload summary page
          • Upload salts and solvates
        • Advanced Registration
          • Register from the Registration page
          • Registering from the Submission page
            • Registering new structures
            • Registering matching structures
            • Possible status messages - how to register
          • Staging area
            • Actions in the Staging area
            • Workspace
            • Status message
            • Structure area
            • Data fields
            • Card
        • Search
          • Structure search option
            • Type of search
            • Match type
            • Search query
          • Bulk edit of additional data
          • Download
        • User Profile
        • Browse page
          • Browser
          • Browse-card
          • Parent level amendment
          • Version level amendment
          • Lot level amendment
        • Appendix A. Calculations
        • Appendix B. Markush Structures
        • Multi-Component compounds
        • Restricted compounds
      • Configuration Guide
        • Administration page
          • Access Control
            • Users and groups
            • Groups and roles
            • Project based access
            • Authentication Providers
          • Forms and Fields
            • Form Editor
            • Dictionary Manager
          • Chemistry
          • Chemical structures
          • General settings
          • Workflow
          • Integration
          • Tools
          • Notifications
          • Pages Configuration
          • Navigation
        • Authentication
        • Database Connections
        • E-mail Server and User Repository
        • Message Queues
      • Deployment Guide
        • Compound Registration Installation requirements
        • Database setup
        • Deploying the application
        • Install through the wizard
        • Upgrade guide
        • Command Line Tools
      • Compound Registration FAQ
      • Compound Registration System Requirements
      • Compound Registration History of Changes
      • API documentation
    • Instant JChem
      • Instant Jchem User Guide
        • Getting Started
          • About Instant JChem
          • Additional Help Material
          • Instant JChem Terminology
          • How the Instant JChem items fit together
          • Windows Menus and Toolbars
          • Instant JChem Quick Start
          • User Settings
          • Licenses
          • Instant JChem Dictionary
        • IJC Projects
          • About Projects
          • Creating a new project
          • Shared Projects
        • IJC Schemas
          • About IJC Schemas
          • Adding a New Schema
          • Connecting to an existing IJC schema
          • Logging in to an IJC schema
          • Editing Schema Connection Settings
          • Deleting a schema
          • Backing up and restoring schemas
        • Viewing and Managing Data
          • Viewing Data
            • Multiple Data Result Set
            • Viewing multi-entity data
          • Form View
            • Design Mode
            • Browse Mode
            • Query Mode
          • Grid View in Instant JChem
          • Grid View from Selection
          • Form Widgets
            • Standard Widgets
              • TextField Widget
              • TextArea Widget
              • Button Widget
              • Label Widget
              • CheckBox Widget
              • Date Widget
              • List Widget
              • Browser Widget
              • Table Widget
              • Multi Field Sheet Widget
              • MolPane Widget
              • Structure Matrix Widget
              • TreeTable Widget
              • Canvas Widget
            • Visualisation Widgets
              • Histogram Widget
              • Scatter Plot Widgets
              • Radar Chart Widget
              • Box Plot Widget
            • Container Widgets
              • Panel Widget
              • Tabbed Panel Widget
          • Conditional Formatting
            • Step by Step guide
            • Creating Templates
          • Copying views
          • Adding and Deleting Rows
            • Editing Multiple Values
          • Printing
          • Renderers
          • Pivoting in IJC
        • Lists and Queries
          • Running Queries
            • Query Overview
            • Query Builder
            • Building Queries
            • Executing Queries
            • Form Based Query
            • Federated Search
          • List and Query Management
          • Cherry Picking
        • Collaboration
          • Sharing Items
          • Instant JChem URLs
        • Import and Export
          • Using File Import
          • RDF File Import
          • Merging Data
          • Exporting Data
        • Editing Databases
          • About Primary Keys
          • Controlling Editability
          • Editing Schemas
            • Editing Data Trees
            • Editing Entities
            • Editing Existing Schemas
            • Editing Fields
              • Calculated Fields
              • Extension Fields
              • Pick list
              • URL Fields
              • Standard Fields
            • Editing Relationships
          • Schema Editor
          • Structure Views
          • Using Multiple Database Schemas
        • Relational Data
          • About Relationships
          • About Data Trees
          • Editing Child Data
        • Chemical Calculations and Predictions
          • About Chemical Calculations and Predictions
          • Adding Chemical Terms Fields
        • Chemistry Functions
          • Performing an Overlap Analysis
          • Standardizer - Standardizing Structure Files
          • Markush Enumeration in IJC
          • Reaction Enumeration
          • R-group analysis
        • Security
          • About Instant JChem Security
          • Changing Security Settings
          • Managing User Database
          • Managing Current Users
          • Security Templates
          • Row level security
          • Using database authentication
          • Oracle JDBC connection encryption
          • Upgrade to Spring Security 5 framework
        • Scripting
        • Updating Instant JChem
          • About Updating Instant JChem
          • About Managing Plugins
          • Updating IJC
          • Managing IJC Update Centers
          • Installing Plugins Offline
          • Updating a Multi-User IJC Installation
          • Activating and Deactivating a Plugin
            • Plugin Manager - Downloaded
            • Plugins Manager - Available Plugins
            • Plugins Manager - Installed
            • Plugins Manager - Settings
            • Plugins Manager - Updates
        • Tips and Tricks
          • Memory Usage
          • Performance Tips
          • Database Implementation Notes
          • Using the database explorer
          • Change standardizer configuration for JChem table
          • Setting up cartridge tables for use in IJC
          • Triggers and sequences
            • Triggers and sequences - Derby
            • Triggers and sequences - MySQL
            • Triggers and sequences - Oracle
        • Instant JChem Tutorials
          • Building a relational form from scratch
          • Building more complex relational data models
          • Defining a security policy
          • Filtering items using roles
          • Lists and Queries management
          • Query building tutorial
          • Reaction enumeration analysis and visualization
          • SD file import basic visualization and overlap analysis
          • Using Import map and merge
          • Using Standardizer to your advantage
          • Pivoting tutorial
      • Instant JChem Administrator Guide
        • Admin Tool
          • Admin Tool connection
          • Clone operation
          • Finish Wizard
          • Migrate operation
          • Delete operation
          • Schema security operation
          • Unlock operation
          • Change owner operation
          • Create JWS files operation
          • Short Descriptions
            • ChangeOwnerShort
            • CloneShort
            • CreateSharedShort
            • DeleteShort
            • MigrateShort
            • RenameShort
            • SecurityShort
            • UnlockShort
          • Create *.ijs file for schema(s)
        • IJC Deployment Guide
        • Supported databases
        • JChem Cartridge
        • Using Oracle Text in Instant JChem
        • Deployment via Java Web Start
        • Startup Options
        • Shared project configuration
        • Accessing data with URLs
        • Instant JChem Meta Data Tables
        • Test to Production Metadata Migrator
        • Filtering Items
        • Deploying the IJC OData extension into Spotfire
        • Reporting a Problem
        • Manual Instant JChem schema admin functions
        • SQL Scripts for Manual Schema Upgrade
        • Database Row Level Security
        • JccWithIJC
      • Instant JChem Developer Guide
        • Working With IJC Architecture
        • IJC API
        • Groovy Scripting
          • Good Practices
          • Schema and DataTree Scripts
            • Simple SDF Exporter
            • Relational SDF Exporter
            • CDX File Importer
            • Data Merger or Inserter from an SDF file
            • Markush DCR Structures Exporter
            • Select Representative Member of Clusters
            • Table Standardizer
            • Populate a Table with Microspecies
            • Create a Diverse Subset
            • Pearson Linear Correlation Co-efficient Calculator
            • PDF Trawler
            • Simple Substructure Search
            • Intersecting Sets
            • Find Entries with Duplicated Field Value
            • Importing Multiple SDF Files
            • Calling External Tools
            • Create Relational Data Tree
          • Forms Model Scripts
            • Create New Form
            • Create New Grid
            • Create New Panel
            • Create New Tabbed Pane
            • Copy Existing Form
            • Canvas Widget Scripts
          • Button Scripts
            • Execute Permanent Query
            • Patent Fetcher Button
            • Batch Searching Button
            • Import or Export a Saved Query SDF Button
            • Back and Next Buttons
            • Add Annotations Button
            • Simple Structure Checker Button
            • Advanced Structure Checker Button
            • Calculate MolWeight and generate SMILES
            • Get Current User
            • Simple ChemicalTerms evaluator
            • Edit Molecule Button
            • TanimotoMultiple
            • Execute Permanent Query Based On Its Name
            • Open existing view in the same dataTree
            • Export selection to file
            • Generate random resultset from actual resultset
          • Form Scripts
            • Drop Down Input Dialog
            • Log user and date upon row addition
            • Scripting hooks
          • Groovy Scriptlets
            • Buttons vs Scripts
            • Creating New Entities
            • Creating New Fields
            • Reading Molecules From a File
            • Insert or Update a Row
            • Evaluator
            • Create or Find a Relationship
            • Adding an Edge to a Data Tree
            • Exporting Data to a File
            • Connect to an External Database
            • Create a New ChemTerm Field
            • Create a New Dynamic URL Field
            • Create a New Static URL Field
        • Java Plugins
          • IJC Plugin Quick Start
          • IJC Hello World Plugin
          • IJC Plugin tutorial - MyAddField plugin
          • IJC Plugin tutorial - MyMathCalc plugin
          • IJC Plugin tutorial - Renderer Example
          • IJC Plugin tutorial - MySCServer webapp
          • IJC Plugin tutorial - MySCClient plugin
          • IJC Plugin tutorial - Canvas widget
          • Java Plugins and Java Web Start
      • Instant JChem FAQ
      • Instant JChem Installation and Upgrade
        • Installation on Windows
        • Installation on Mac OS X
        • Installation on Linux or Solaris
        • Installation on Other Platforms
        • Uninstall
        • Changing Java Version
      • Instant JChem Licensing
      • IJC Getting Help and Support
      • Instant JChem System Requirements
      • Instant JChem History of Changes
    • Markush Editor
      • Markush Editor Help and Support
      • Markush Editor History of Changes
      • Markush Editor Installation and System Requirements
      • Markush Editor Licensing
      • Markush Editor User's Guide
    • Design Hub
      • History of changes
      • Install guide
      • Configuration guide
      • Plugin Catalogue
      • Developer guide - REST API
      • Developer guide - resolver plugins
      • Developer guide - real time plugins
      • Developer guide - real time plugin templates
      • Developer guide - export plugins
      • Developer guide - storage plugins
      • Developer guide - company support plugins
      • Developer guide - registry plugins
      • Developer guide - theme customization
      • Install guide - Kubernetes
    • Marvin Desktop Suite
      • MarvinSketch
        • User Guide
          • Getting Started
          • Graphical User Interface
            • Canvas
            • Menus
              • File Menu
              • Edit Menu
              • View Menu
              • Insert Menu
              • Atom Menu
              • Bond Menu
              • Structure Menu
              • Calculations Menu
              • Services Menu
              • Help Menu
            • Toolbars
              • General Toolbar
              • Tools Toolbar
              • Atoms Toolbar
              • Simple Templates Toolbar
              • Advanced Templates Toolbar
              • Search Online Toolbar
              • Special Toolbars
            • Context Menus
            • The Status Bar
            • Dialogs
              • Multipage Settings
              • Document Style
              • Template Library Manager
              • Edit Source
              • Customize
              • Where Are the Settings Stored
              • Format Dialog
              • Periodic Table
              • Preferences
              • Create Group Dialog
              • Attach Data
              • Edit Properties
              • About
            • Shortcuts
            • Customizing the GUI
            • Configurations
            • Services Module
              • Set Services
              • Settings of the Different Service Types
                • Local
                • HTTP Service
                • SOAP Service
          • Working in MarvinSketch
            • Structure Display Options
              • Customizing Structure Drawing Styles
                • Drawing Settings
                • Drawing Styles
              • Structure Display
              • Color Schemes
              • Display Options for Implicit and Explicit Hydrogens
              • Displaying the Label of Carbon Atoms
              • Error Highlighting
              • Saving Display Options
            • Basic Editing
              • Selecting a Structure
              • Copy-Paste and DragandDrop
              • Geometric Transformation of Structures and Objects
                • Moving and Rotating
                • Scaling
                • Flipping
                • Mirroring
                • Inverting
              • Cleaning
              • Deleting a Structure
              • Editing the Source
            • Drawing Simple Structures
              • Draw Atoms
              • Draw Bonds
              • Draw Chains
              • Sprouting
              • Merge Structures
              • Templates
              • Draw Stereocenters
              • Draw Coordination Compounds
              • Insert-Edit New Structure or Fragment
              • Atom Label Editor
            • Drawing More Complex Structures
              • Substructure Groups
                • Abbreviated (Superatom) Groups
                • Polymers
                  • Draw Polymers
                  • Structure-based Representation of Polymers
                    • Structural Repeating Unit (SRU) Polymers
                    • Repeating Units with Repetition Ranges - Frequency Variation
                    • Copolymers
                  • Source-based Representation of Polymers
                • Unordered Mixtures and Ordered Mixtures
                • Charge of the Group
              • Markush Structures
                • R-groups
                • Atom Lists and NOT Lists
                • Position Variation
                • Homology Groups
                • Frequency Variation
                  • Repeating Units with Repetition Range
                  • Draw Link Nodes
              • Biomolecules
              • Atom, Bond, and Molecule Properties
            • Drawing Reactions
              • Creating Reactions
              • Mapping Reactions
              • Electron Flow Arrows
            • Using Integrated Calculations
            • Graphical Objects
              • Adding, Editing and Formatting Text
              • Drawing Shapes
            • Import and Export Options
              • Opening a Molecule File
              • Saving a Molecule File
              • Exporting to Image
            • Multipage Documents
              • Creating a Multipage Document
              • Navigating in Multipage Documents
            • Printing
          • Chemical Features
            • Valence Check
            • Structure Checker
            • Charges, Isotopes, Radicals
              • Charges
              • Isotopes
                • Isotope List Editing
              • Radicals
            • Stereochemistry
            • Reaction Schemes
            • Abbreviated Groups - Superatom Group
            • Query Features
              • R-groups
              • Link Nodes
              • Atom List and NOT List
              • Atom Properties
              • Generic Query Atom
              • Homology Group
            • Attached Data
            • Calculations
              • Analysis Box
              • Calculator Plugins in MarvinSketch
          • Marvin OLE User Guide
            • Install and Uninstall
            • How to Use
            • Customizing Marvin OLE Editing Mode
            • Redirecting Other Vendors' OLE Objects to Marvin OLE
            • Logging
            • Troubleshooting and Administration
            • Known Issues
          • Appendix
            • Customizing
            • Trademarks
          • Tutorials
        • Developer Guide
          • Customizing the GUI - Server Side
            • Customizing the GUI
            • Customizing the GUI - Assign New Action
            • Clipboard Formats Configuration
            • Configure the Attach Data Dialog
          • Parameters and Events
            • Parameters
              • JavaBeans parameters
                • Display Parameters
                  • Structure Templates
                  • Query Properties in Molecule File Formats
                • Structure Display Parameters
                • Structure Parameters
                • Other Parameters
            • Events Fired by JavaBean
              • Action Events
              • Property Change Events
          • Marvin Beans for Java
            • Marvin Beans API Documentation
            • Marvin Beans Examples
              • Examples
                • Simple Bean
                • Images
                • Structure Display Parameters
                • Structure Templates
                • Text Box Example
                  • JFileChooser Example
              • Examples
                • Simple Bean Example
                • JTable Example
                • Table View Example
                • Table View Example with Parameters
                • JFileChooser Example
                • Image Generation Using Marvin Beans
                • Excel Sheet Generation Using Marvin Beans
                • Installation Guide to jnlp Examples
            • Marvin Beans Frequently Asked Questions
          • Marvin Services
            • Manage Marvin Services
            • Service Implementations
              • Local Services
              • WSDL SOAP RPC Services
              • XML-RPC
              • JSON-RPC
              • HTTP
              • cxcalc integration
              • Chemical Terms Integration
              • Instant JChem Integration
              • JChem For Excel Integration
            • Configuration of Services
            • Calling Services
            • Viewing the Results
          • Java Web Start
        • MarvinSketch Application Options
          • Java VM Options in MarvinSketch
          • Running the Applications
      • MarvinView
        • User Guide
          • Getting started
          • How to Use MarvinView Features
            • Importing and Exporting Molecules
            • Editing Molecules
            • Structure Display Options
            • Manipulating the Molecule
            • How to Work with Multipage Molecular Documents
          • Graphical User Interface
            • Dialogs
              • Preferences Dialog
                • Display
                • Bonds
                • Structure Tab
                • Checkers Tab
                • Services Tab
                • Save-Load Tab
              • Edit Source Dialog
              • Table Options
              • About
            • Menus
              • File Menu
              • Edit Menu
              • View Menu
              • Table Menu
              • Structure Menu
              • Tools Menu
              • Pages
              • Help Menu
        • Developer's Guide
          • JavaBeans Parameters
            • Display Parameters
            • Structure Display Parameters
            • Structure Parameters
            • 3D and Animation
              • RasMol Scripts
            • Molecule Tables
              • The layout Parameter
              • The param Parameter
              • The celli and celli_j parameters
              • Table View
            • Other Parameters
          • Events Fired by the JavaBean
          • Troubleshooting - MView and JMView Tables
        • Application Options
          • Options
            • Java VM Options
            • Property Colors
      • Marvin Bundles
      • Marvin Desktop Suite Installation and Upgrade
      • Marvin Desktop Suite History of Changes
      • Marvin Desktop Suite Licensing
    • Molconvert
    • Plexus Connect
      • Plexus Connect - Quick Start Guide
      • Plexus Connect - User Guide
        • Plexus Connect - Log in
        • Plexus Connect - Dashboard
        • Plexus Connect - Exporting Your Data
        • Plexus Connect - Export Templates
        • Plexus Connect - Browsing in Your Data Set
        • Plexus Connect - Selecting Data
        • Plexus Connect - Searching in Your Database
          • Plexus Connect - Structure Search
        • Plexus Connect - Saved Queries
        • Plexus Connect - List Management
        • Plexus Connect - Sorting Data
        • Plexus Connect - Sharing Data with Other Users
        • Plexus Connect - Charts View
        • Plexus Connect - R-group Decomposition
      • Plexus Connect - Administrator Guide
        • Plexus Connect - Authentication
        • Plexus Connect - Sharing Schema Items Among Users
        • Plexus Connect - Business Flags
        • Plexus Connect - Row-level Security
        • Plexus Connect - Shared data sources
        • Plexus Connect - Plexus storage
        • Plexus Connect - Configuration Files
        • Plexus Connect - Simple table
        • Plexus Connect - Getting the Plexus Backend and Frontend Log Files
        • Plexus Connect - Form Editor
        • Plexus Connect - Scripting
          • Plexus Connect - Python Scripting
            • Plexus Connect - Jupyter Example of usage
          • Plexus Connect - JavaScript Scripting
        • Plexus Connect - API keys
        • Plexus Connect - Deploying Spotfire Middle Tier solution
      • Plexus Connect - Installation and System Requirements
      • Plexus Connect - Licensing
      • Plexus Connect - Getting Help and Support
        • Plexus Connect - Troubleshooting for Plexus Connect
      • Plexus Connect - FAQ
      • Plexus Connect - Privacy Policy
      • Plexus Connect - Terms of Use for the Demo Site
      • Plexus Connect - History of Changes
      • Plexus Connect - Schema Refresh Without Restart
    • Trainer Engine
      • Introduction
      • Installation
      • User Guide
      • Configuration
      • History of Changes
      • Known Issues
      • Getting help & support
  • Toolkits and Components
    • AutoMapper
      • AutoMapper User's Guide
    • Calculator Plugins
      • Introduction to Calculator Plugins
      • Calculator Plugins User's Guide
        • Physico-chemical plugins
          • pKa Plugin
          • Major Microspecies Plugin
          • Isoelectric Point Plugin
          • logP Plugin
          • logD Plugin
          • HLB Predictor
          • Solubility Predictor
          • NMR Predictor
          • Tautomer Generation Plugin
          • Stereoisomer Generator Plugin
          • Stereo Analysis - calculating stereo descriptors
          • CNS MPO Score Predictor
          • BBB Score Predictor
          • hERG Predictor
        • Molecular modeling plugins
          • Charge Plugin
          • Orbital Electronegativity Plugin
          • Polarizability Plugin
          • Dipole Moment Calculation Plugin
          • Conformer Plugin
          • 3D Alignment Plugin
          • Molecular Dynamics Plugin
        • Structural property plugins
          • Elemental Analysis Plugin
          • Topological Analysis Plugin
          • Geometrical Descriptors Plugin
          • Polar Surface Area Plugin 2D
          • Molecular Surface Area Plugin 3D
          • Structural Frameworks Plugin
          • Hydrogen Bond Donor Acceptor Plugin
          • Huckel Analysis Plugin
          • Refractivity Plugin
          • Resonance Plugin
        • Markush Enumerator Plugin
          • Markush features
            • R groups
            • Atom lists
            • Bond lists
            • Link nodes CP
            • Repeating units
            • Position variation bonds
            • Homology Groups CP
          • Markush functionalities
            • Sequential enumeration
            • Selected part enumeration
            • Calculate library size
            • Random enumeration
            • Valence filter
            • Homology group enumeration
            • Scaffold alignment and coloring
            • Markush code generation
        • Training the Calculator Plugins
          • cxtrain command line tool
          • Training the logD Plugin
          • Training the logP Plugin
          • Training the pKa Plugin
        • cxcalc command line tool
          • cxcalc calculator functions
      • Calculator Plugins Developer's Guide
        • Calculator Plugins Web Services
        • Concurrent plugin API usage
        • Custom Calculator Plugin implementation
        • Integration of third-party calculations into Marvin and JChem
        • Introduction to developers
        • Plugin API usage examples
        • Using Calculator Plugins via API
      • Calculators on AWS Marketplace
        • Getting started
        • Pricing
        • Developer's guide
      • Calculators in Playground
      • Background materials
        • Calculation of partial charge distribution
        • Generate3D
        • Isoelectric point (pI) calculation
        • LogP and logD calculations
        • NMR model prediction
        • pKa calculation
        • Red and blue representation of pKa values
        • Tautomerization and tautomers
        • Validation results
        • Tautomerization and tautomer models of Chemaxon
        • Theory of aqueous solubility prediction
        • The tautomerization models behind the JChem tautomer search
        • Calculators performance reports
      • Calculator Plugins Licensing
      • Calculator Plugins FAQ
      • Calculator Plugins Getting Help and Support
      • Calculator Plugins History of Changes
      • Calculator Plugins System Requirements
    • Biomolecule Toolkit
      • Biomolecule Toolkit Administrator's Guide
        • Biomolecule Toolkit Deployment Guide
          • Biomolecule Toolkit Docker Setup
            • Running the Biomolecule Toolkit Container
          • Biomolecule Toolkit WAR Deployment
            • Download Package
            • System Environment Setup
            • License Files
            • Tomcat Deployment
          • Biomolecule Toolkit System Requirements
          • Database Setup for Biomolecule Toolkit
          • Schema Initialization
      • Biomolecule Toolkit User's Guide
        • Biomolecule Toolkit Library Manager
        • Biomolecule Toolkit Query Guide
          • Sequence Search Types
          • Query Features BMT
          • Sequence Search Options
          • Additional Data Handling
      • Biomolecule Toolkit API documentation
      • Biomolecule Toolkit History of Changes
    • Chemaxon Synergy
      • Chemaxon Synergy User Guide
        • Chemaxon Synergy User Guide for Team Members
          • Accessing Applicatons
          • Groups
          • Logging in to Chemaxon Synergy
          • Logging out of Synergy
        • Guide for Team Administrators
          • Inviting Other Users to the Team
          • Inactivating Users of the Team
          • Adding Another Team Administrator to the Team
          • Managing Groups
          • Managing Projects
          • Centrify configuration
      • Chemaxon Synergy Developer Guide
        • Application and Service Discovery
        • Application authentication
        • Application authorization
        • Chemaxon Synergy integration workshop
        • Synergy Features Catalogue
          • SF-001 Application info
          • SF-002 Healthcheck
          • SF-003 Application icon
          • SF-004 Web endpoints
          • SF-005 Logout
          • SF-006 Deep links
          • SF-007 Form
          • SF-008 Forms of type
          • SF-009 Form types
          • SF-010 Notification Event Types
      • Chemaxon Synergy Administrator Guide
        • Guide for System Administrators
          • Creating a Team Space
          • Registering Applications
          • Removing an application instance from a team space when it is not needed anymore
      • Chemaxon Synergy History of Changes
    • Document to Structure
      • Document to Structure User Guide
        • Configuring OSR tools for Document to Structure
      • Document to Structure Developer Guide
      • Document to Structure Format Options
      • Document to Structure Licensing
      • Document to Structure Getting Help and Support
      • Document to Structure History of Changes
        • Document to Structure Migration Guide
    • JChem Base
      • JChem Base Administration
        • Installation Guide
        • Administration Guide - JChem Manager
        • Multiuser Support
        • Tomcat Configuration
        • Preparing and Running Batch Files and Shell Scripts
      • JChem Base Developer's Guide
        • Introduction for Java applications
        • JChem Chemical Database Concepts
        • File Import Export Tools
        • Modifying Structure Tables
        • R-group Decomposition Developer's Guide
        • Structure Searching
        • Utilities
        • JChem Base API documentation
      • JChem Base User's Guide
        • Query Guide
          • Search types
          • Similarity search
          • Query features JCB
          • Stereochemistry JCB
          • Special search types
            • R-group structures JCB
            • R-group Decomposition User's Guide
            • Searching in Markush targets tables
            • Reaction search
            • Polymer search
            • Sophisticated chemical formula search
          • Search options
            • Atomproperty specific search options
            • Attached data specific search options
            • Bond specific search options
            • Chemical terms specific search options
            • Database specific search options
            • General search options
            • Hitdisplay specific search options
            • Markush structure specific search options
            • Performance specific search options
            • Polymer specific search options
            • Query feature specific search options
            • Reaction specific search options
            • Resultset specific search options
            • Similarity specific search options
            • Stereo specific search options
            • Tautomer specific search options
            • Tautomer search - Vague bond search - sp-Hybridization
          • Standardization JCB
          • Hit display-coloring
          • Appendix JCB
          • Matching Query - Target Examples
        • jcsearch Command Line Tool
        • jcunique Command Line Tool
        • Homology Groups in Markush Structures
      • JChem Base FAQ
        • JCB FAQ
        • JChem Base and Cartridge Performance Information JCB
          • Environment Information of Performance Benchmark JCB
      • JChem Base History of Changes
        • JChem History of Changes from version 1.0.4 to 6.3.4
      • JChem Base Getting Help and Support
    • JChem Choral
      • Choral Installation and Administration
        • Choral Installation on Amazon Oracle RDS
        • Choral Installation on Amazon Oracle RDS and Fargate
        • Choral Upgrade without Downtime
      • Choral API Usage
      • Second Generation Search Engine
      • Choral FAQ and Known Issues
      • Comparison of JChem Choral and JChem Oracle Cartridge
      • JChem Choral History of Changes
    • JChem Oracle Cartridge
      • JChem Oracle Cartidge Administration
        • JChem Oracle Cartridge - Getting started guide
        • Installation and administration of JChem Cartridge for Oracle
        • Migration of JChem Oracle Cartidge
      • JChem Oracle Cartridge Developer's Guide
        • JChem Cartridge for Oracle
        • Cartridge API
        • Cartridge API - Deferrred Error Handling
        • Description of parameters
        • External Java interfaces
        • Generic Molecular Descriptor Support
      • JChem Oracle Cartridge FAQ
        • JOC FAQ
        • JChem Cartridge Performance Information
          • JOC Environment Information of Performance Benchmark
      • JChem Oracle Cartridge History of Changes
      • JChem Oracle Cartridge Getting Help and Support
    • JChem Microservices
      • Calculations Web Services
      • DB Web Services
      • IO Web Services
      • Markush Web Services
      • Reactor Web Services
      • Structure Checker Web Services
      • Structure Manipulation
      • Second Generation Search Engine
      • JChem Microservices FAQ and Known Issues
      • JChem Microservices History of Changes
    • JChem PostgreSQL Cartridge
      • Getting Started JChem PostgreSQL Cartridge
      • JChem PostgreSQL Cartridge Manual
        • Installation and Administration
          • Install JPC on non standard PostgreSQL setup
          • JPC HA Installation Guide
          • Upgrade of PostgreSQL database together with JChem PostgreSQL Cartridge
        • API Usage
          • JPC perf_out parameters
          • Deprecated API
          • Custom Structure Checker and Fixer in JPC
        • Citus Distibuted JChem PostgreSQL Cartridge
        • JDBC Caution
      • Second Generation Search Engine
      • JChem PostgreSQL Cartridge FAQ and Known Issues
      • JChem PostgreSQL Cartridge History of Changes
      • JChem PostgreSQL Cartridge Getting Help and Support
      • JChem PostgreSQL Cartridge Licensing
      • Comparison of JChem PostgreSQL Cartridge and JChem Oracle Cartridge
      • Migration Guide
    • JKlustor
      • What is JKlustor
      • Clustering methods
        • Hierarchical clustering
          • MCS search and LibMCS
            • Maximum Common Substructure (MCS) search
            • Library MCS (LibMCS) clustering
              • LibMCS GUI
            • LibMCS licensing
          • Ward clustering
        • Non-hierarchical clustering
          • Bemis-Murcko clustering
          • Diverse Set Selection
          • Jarvis-Patrick clustering
          • K-means clustering
          • Sphere Exclusion clustering
          • Comparing libraries with Compr
      • CreateView
      • JKlustor History of Changes
      • JKlustor licensing
    • Markush Tools
      • Markush Composer
      • Markush Enumeration
    • Marvin JS
      • User Guide
        • Getting Started
        • Editor Overview
          • Editor Canvas
          • Dialogs
            • Abbreviated Groups Dialog
              • Default Abbreviated Group List
            • Atom Properties Dialog
            • Atom Query Properties Dialog
            • Attached Data Dialog
            • Bond Properties Dialog
            • Export Dialog
            • Import Dialog
            • Periodic Table Dialog
            • Pseudo Atom Dialog
            • R-group Dialog
            • R-logic Dialog
            • Set Box Color Dialog
            • S-group Dialog
            • Text Dialog
            • View Settings Dialog
          • Toolbars
            • Atom Toolbar - Right Toolbar
            • General Toolbar - Top Toolbar
            • Template Toolbar - Bottom Toolbar
            • Tools Toolbar - Left Toolbar
          • Context Menus
            • Abbreviated Group Context Menu
            • Atom Context Menu
            • Bond Context Menu
            • Empty Space Context Menu
            • Graphical Objects Context Menu
            • R-group Label Context Menu
            • Selection Context Menu
            • S-group Context Menu
        • Drawing and Editing Options
          • Abbreviations
          • Atom
          • Atom Mapping
          • Bond
          • Chains
          • Copy Structures
          • Graphical Objects
          • Groups
          • Radicals and Lone Pairs
          • Reaction
          • Reaction Mechanism
          • R-group Representation and Editing Options
          • Rotating in 2D
          • Snapped Objects
          • Structure Templates
          • Peptides
          • Text Editing
        • Feature Overview Pages
          • Markush Structures
          • Query Structures
          • Stereochemistry
          • Reactions and Mechanisms
          • Representation of JChem Base Query Functions
        • Keyboard Shortcuts
      • Developer Resources
        • Marvin JS Installation and System Requirements
        • Embedding Marvin JS
        • Extending Functionalities with Web Services
        • Troubleshooting
        • Third Party Licenses
        • Marvin JS Web Services
      • History of Changes
      • Frequently Asked Questions
      • Video Tutorials
      • Comparison of Marvin JS and MarvinSketch Feature Sets
    • Marvin Pro
      • Installation
      • How Do I?
        • Draw a Simple Molecule (Penicillin)
        • Draw a Simple Molecule (Phytol)
        • Draw a Synthesis Scheme
        • Use Basic Chemical Intelligence
        • Draw a Publication Image
      • References
        • Tools Overview
        • Shortcuts
        • Handling of Abbreviated Groups
        • Comparison of Marvin Pro and Marvin JS Feature Sets
      • History of Changes
    • Name to Structure
      • Name to Structure User Guide
        • Custom Dictionary in Name Import
        • Custom Webservice in Name Import
      • Name to Structure Developer Guide
      • Name to Structure Format Options
      • Name to Structure Getting Help and Support
      • Name to Structure History of Changes
      • Name to Structure Licensing
    • Reactor
      • Reactor User's Guide
        • Introduction to Reactor
          • Reactor Features
        • Reactor Getting Started
          • Reactor in Step-by-Step
        • Reactor Concepts
          • Virtual Library Design
          • Smart reactions
            • Stereoselectivity
            • Regioselectivity
        • Reactor Examples
          • Simple examples
          • Multiple reactants
          • Reactivity rules
          • Reactor usage examples
          • Selectivity rules
        • Working with Reactor
          • Specifying Reactions
            • Drawing a Reaction Scheme
              • Introducing the Reaction Scheme
              • Advanced Reaction Scheme Drawing
            • Reaction Library
          • Specifying Reactants
          • Reaction Mapping
            • Orphan atoms
            • Other reaction mapping styles
          • Reaction Rules
            • Exclude Rule
            • Reactivity Rule
            • Selectivity Rule
          • Reactant Combinations
          • Running Reactor
          • Reactor Interfaces
            • Reactor Application
              • Add reaction file
              • Specify reactants
              • Set runtime options for reaction processing
                • General options
                • Advanced options
                • Synthesis code options
                • Property Copy
              • Run the reaction and generate products in batch mode
            • Reactor Command-line Application
              • Using the react command-line interface
              • Options - react CLI
                • Reaction file - React CLI
                • Input (Reactants) - React CLI
                • Reactant processing modes - React CLI
                • Output - React CLI
                • Reaction rules - React CLI
                • Product related options
                • Reporting options
                • Mapping related options
                • Special options
                • Ratio - React CLI
                • Reverse reaction - React CLI
            • Reactor in Instant JChem
            • Reactor in JChem for Excel
              • JCReactProductStructure function
                • Prerequisites of JCReactProductStructure function
                • Insert JCReactProductStructure function
                • Populate cells with JCReactProductStructure results
                • Example on multiple product as result
              • JCReactReactionStructure function
                • Prerequisites - JCReactReactionStructure
                • Insert JCReactReactionStructure function
                • Populate cells with JCReactReactionStructure result
              • Reactor Examples inJChemforExcelUsage Reactor
            • Reactor in KNIME
              • Quick help
            • Reactor in Pipeline Pilot
            • Reactor in Plexus Suite
            • API, Web Services
            • Glossary
              • Isotopes
              • Manual selection
              • Output file format
              • Product list
              • Ratio
              • Reaction File - Reaction Equation
              • Reaction stereo
              • Reversed reaction
              • Standardization in Reactor
              • Standard Properties in the Chemaxon Reaction Library
      • Reactor FAQ
      • Reactor Licensing
      • Reactor Getting Help and Support
      • Reactor History of Changes
      • Reactor Configuration Files
    • Screen
      • Introduction to Virtual Screening
      • ScreenMD
      • Screen3D
      • Screen Developer Guide
      • Screen History of Changes
      • Screen licensing
    • Standardizer
      • Standardizer User's Guide
        • Standardizer Introduction
          • Standardizer in a Nutshell
          • Why Use Standardizer
        • Standardizer Getting Started
          • Standardization in Step-by-Step
          • Quick Help on Configuration Design
        • Standardizer Concepts
          • Action
          • Standardizer Configuration
          • Standardizing Molecules
          • Typical Workflows
        • Working with Standardizer
          • Standardizer Actions
            • Add Explicit Hydrogens
            • Alias to Atom
            • Alias to Group
            • Aromatize
            • Clean 2D
            • Clean 3D
            • Clear Isotopes
            • Clear Stereo
            • Contract S-groups
            • Convert Double Bonds
            • Convert Pi-metal Bonds
            • Convert to Enhanced Stereo
            • Create Group
            • Dearomatize
            • Disconnect Metal Atoms
            • Expand S-groups
            • Expand Stoichiometry
            • Map
            • Map Reaction
            • Mesomerize
            • Neutralize
            • Remove Absolute Stereo
            • Remove Atom Values
            • Remove Attached Data
            • Remove Explicit Hydrogens
            • Remove Fragment
            • Remove R-group Definitions
            • Remove Stereo Care Box
            • Replace Atoms
            • Set Absolute Stereo
            • Set Hydrogen Isotope Symbol
            • Strip Salts
            • Tautomerize
            • Transform
            • Ungroup S-groups
            • Unmap
            • Wedge Clean
            • Remove
            • Standardizer Transform
            • Custom Standardizer Actions
            • Remove Solvents
          • Creating a Configuration Standardizer
          • Interfaces Standardizer
            • Standardizer Application
              • Setting up Profiles
            • Standardizer Editor
            • Standardizer Command-line Application
            • Standardizer JChem Base
            • Standardizer JChem for Excel
            • Standardizer Instant JChem
            • Standardizer JChem Cartridge
            • Standardizer KNIME
            • Standardizer Pipeline Pilot
          • Standardizer File Formats
      • Standardizer Developer's Guide
      • Standardizer Installation and System Requirements
      • Standardizer Licensing
      • Standardizer Getting Help and Support
      • Standardizer History of Changes
    • Structure Checker
      • Structure Checker User's Guide
        • Introduction
          • Structure Checker in a Nutshell
        • Structure Checker Getting Started
        • Structure Checker Concepts
          • Checkers
          • Fixers
          • Structure Checking of Molecules
        • Working with Structure Checker
          • Checker List
            • Abbreviated Group
            • Absent Chiral Flag
            • Absolute Stereo Configuration
            • Alias
            • Aromaticity Error
            • Atom Map
            • Atom Query Property
            • Atom Value
            • Atropisomer
            • Attached Data
            • Bond Angle
            • Bond Length
            • Bond Topology
            • Brackets
            • Chiral Flag
            • Chiral Flag Error
            • Circular R-group Reference
            • Coordination System Error
            • Covalent Counterion
            • Crossed Double Bond
            • Custom Checkers and Fixers
            • Double Bond Stereo Error
            • EZ Double Bond
            • Empty Structure
            • Explicit Hydrogen
            • Explicit Lone Pairs
            • Incorrect Tetrahedral Stereo
            • Isotope
            • Metallocene Error
            • Missing Atom Map
            • Missing R-group Reference
            • Molecule Charge
            • Multicenter
            • Multicomponent
            • Multiple Stereocenter
            • Non-standard Wedge Scheme
            • Non-stereo Wedge Bond
            • OCR Error
            • Overlapping Atoms
            • Overlapping Bonds
            • Pseudo Atom
            • Query Atom
            • Query Bond
            • Racemate
            • Radical
            • Rare Element
            • R-atom
            • Reacting Center Bond Mark
            • Reaction Map Error
            • Relative Stereo
            • R-group Attachment Error
            • R-group Bridge Error
            • R-group Reference Error
            • Ring Strain Error
            • Solvent
            • Star Atom
            • Stereo Care Box
            • Stereo Inversion Retention Mark
            • Straight Double Bond
            • Substructure
            • Three Dimension 3D
            • Unbalanced Reaction
            • Unused R-group Reference
            • Valence Error
            • Valence Property
            • Wedge Error
            • Wiggly Bond
            • Wiggly Double Bond
          • Creating a Configuration Structure Checker
          • Interfaces of Structure Checker
            • Structure Checker in MarvinSketch
            • Structure Checker Application
            • Structure Checker Editor
            • Structure Checker Command Line Application
            • JChem Cartridge and Structure Checker
      • Structure Checker Developer's Guide
        • Introduction to Structure Checker API
        • Classes, interfaces and configuration
        • Implementing a new Structure Checker
        • Create Graphical User Interface for Checker Options
        • Implementing Fixers
      • Structure Checker Installation and System Requirements
      • Structure Checker Licensing
      • Structure Checker Getting Help and Support
      • Structure Checker History of Changes
    • Structure to Name
      • Structure to Name User Guide
      • Structure to Name Developer Guide
      • Structure to Name Format Options
      • Structure to Name Licensing
      • Structure to Name Getting Help and Support
      • Structure to Name History of Changes
  • Third-party Integration
    • JChem for Office
    • KNIME Nodes
      • Administration
      • Licensing
      • Getting Help and Support
      • History of Changes
    • Pipeline Pilot Components
      • Administration
      • Product Presentation
      • Getting Help and Support
      • Licensing
      • History of Changes
  • Cross-Product Documentation
    • Chemaxon Configuration Folder
    • Chemical Fingerprints
      • Extended Connectivity Fingerprint ECFP
      • Chemical Hashed Fingerprint
      • Pharmacophore Fingerprint PF
      • Reaction Fingerprint RF
      • MACCS-166 Fingerprint
      • Fingerprint and descriptor generation - GenerateMD
      • Pharmacophore perception - PMapper
      • Chemical Fingerprints licensing
    • Chemical Terms
      • Available Functions
        • Functions by Categories
        • Functions in Alphabetic Order
        • Chemical Terms functions in alphabetic order
        • Notes on Chemical Terms functions
      • Chemical Terms Getting Help and Support
      • Chemical Terms Getting Started
      • Chemical Terms Introduction
      • Products using Chemical Terms
        • Chemical Terms Evaluator
          • Evaluator Examples
        • Instant JChem CT
        • JChem Base CT
        • Chemical Terms - JChem Cartridge
        • Chemical Terms - JChem for Excel
        • Chemical Terms - Reactor
        • Chemical Terms - KNIME
        • Chemical Terms - Pipeline Pilot
      • The Chemical Terms Language
        • Language Elements
        • Expression Syntax
        • Predefined Functional Groups and Named Molecule Groups
        • Initial Scripts
        • Input Contexts
        • Chemical Terms Configuration
        • Examples
          • Evaluator and JChem Cartridge Examples
          • Reactor Examples CT
          • Search Filter Examples
      • Usage examples CT
        • Basic Calculations
        • Search Filters
        • Reaction Processing
        • Markush Enumeration CT
    • File Formats
      • Basic export options
      • Compression and Encoding
        • Base64
        • GZIP
      • Document formats
        • Marvin Documents - MRV
          • MRV Export Options
          • Schema and Validation
        • Marvin Documents - CXON
        • ISISDraw sketch file - SKC
          • Features imported from SKC files
          • Features exported to SKC format
        • ChemDraw sketch file - CDX, CDXML
          • Features imported from CDX and CDXML files
          • Features exported to CDX
      • Graphics Formats
        • Image Export in Marvin
          • JPEG
          • BMP
          • PNG
          • EMF
          • PDF
          • SVG
          • TIFF
          • EPS
        • Export to POV-Ray
        • Image Import in Marvin
      • Molecule file conversion with Molconverter
      • Molecule Formats
        • CML
          • CML Export Options
        • MDL MOL files
          • MDL MOLfiles, RGfiles, SDfiles, Rxnfiles, RDfiles formats
          • Chemaxon specific information in MDL MOL files
          • MOL file compression
          • MDL MOL Import and Export Options
          • Default valence of metal atoms
        • Daylight SMILES related formats
          • SMILES
          • SMARTS
          • SMILES and SMARTS import and export options
        • Chemaxon SMILES extensions
          • Chemaxon Extended SMILES and SMARTS - CXSMILES and CXSMARTS
          • CXSMILES and CXSMARTS import and export options
          • Chemaxon SMILES Abbreviated Group
        • IUPAC InChI, InChIKey, RInChI and RInChIKey
          • InChi and InChiKey export options
        • Name
        • Sequences - peptide, DNA, RNA
          • Peptide import and export options
        • FASTA file format
          • FASTA import options
        • Protein Data Bank (PDB) file format
          • Standard PDB residues
          • PDB import and export options
        • Tripos SYBYL MOL and MOL2 formats
          • Tripos Mol2 format
          • Tripos SYBYL MOL format
        • XYZ format
          • XYZ import and export options
        • Gaussian related file formats
          • Gaussian Cube format
          • Gaussian Cube import and export options
          • Gaussian input-output format
        • Markush DARC format - VMN
          • VMN peptide import option
        • CSV
    • Input and Output System
      • Supported formats
      • Input and Output System - Import
      • Input and Output System - Export
      • Image generation
      • Importing and Exporting molecule properties
      • Molecule converter
      • Integrating your own format
    • License Management
      • License Installation
        • Installing to Desktops
        • Installing to Servers
        • License Server Configuration
        • Licensing Applets
        • Licensing via Java Web Start
        • Setting environment variables
      • License Management FAQ
      • About Chemaxon Licensing
      • Licensing Prior Version 5.0
      • License Report
      • Merging Licenses
    • Long Term Supported Releases - LTS
      • LTS Release
      • LTS Release Versions
      • Documentation - LTS release
    • Notice about CAS Registry Numbers®
    • Public Repository
    • Scientific Background
      • Aromatization
        • Methods
        • Differences between the Basic and General aromatization methods
        • Aromatization of query structures
        • Dearomatization
      • Stereochemistry
        • Parity
        • Tetrahedral Stereo
        • Cis-trans stereo
        • Axial stereoisomerism - atropisomerism
      • Valence Calculations
        • Alkali metals and Hydrogen
        • Alkaline earth metals
        • Transition metals, Lanthanoids and Actinoids
        • Boron group
        • Carbon group
        • Nitrogen group
        • Oxygen group
        • Halogens
        • Noble gases
        • Aromatic systems
        • Special cases - abbreviations query properties
    • Structure Representation
      • Structure Representation - Class Representation
        • MolAtom
        • MolBond
        • Molecule Graph
        • R-group structures
          • Implementation
        • Representation of reactions
        • S-groups
        • Examples for Molecule representation
      • Aromaticity
        • Converting structure from Kekule form to aromatic form
        • Differences between the basic and general methods
        • Converting structure from aromatic form to Kekule form
      • Implicit, Explicit and Query Hydrogens
        • Converting explicit Hydrogens to implicit
        • Converting implicit Hydrogens to explicit
        • Query Hydrogens
      • Assigning stereochemistry descriptors
        • CIP Stereo chemistry
        • Stereoisomers around double bonds
          • Cis Trans stereoisomers in 0 Dimension
          • Cis Trans stereoisomers in 2 or 3 Dimensions
          • EZ stereoisomers
        • Parity information
          • Parity information in 0 Dimension
          • Parity information in 2 or 3 Dimensions
        • Chirality
      • Cleaning options
      • Deprecated and Removed Methods
        • All of the Deprecated and Removed Methods
        • Methods Deprecated or Removed in version 14.7.7.0
        • Methods Deprecated or Removed in version 6.3
        • Methods Deprecated or Removed in version 6.2
        • Methods Deprecated or Removed in version 6.1
      • Relative configuration of tetrahedral stereo centers
      • Iterator Factory
      • Atom and bond-set handling
      • Graphic object handling
    • Supported Java Versions
  • Legal
    • Legal Documents
      • Cookie Policy
      • End User License Agreement (EULA)
      • End User Subscription Agreement (EUSA)
      • Personal Data Management - General
      • Personal Data Management - Newsletter Subscriptions
      • Privacy Policy
      • Privacy Policy for Chemaxon Synergy
      • Terms of Use
      • Notice for UX Research Program
      • Terms and Conditions for UX Research Program
      • Recording Policy
    • White Papers
      • Chemicalize Security White Paper
      • Hosted Services Security White Paper
      • SaaS Security White Paper
  • Discontinued Products
    • Document to Database
      • Document to Database Administration Guide
      • Document to Database System Requirements
      • Document to Database Licensing
      • Document to Database Getting Help and Support
      • Document to Database History of Changes
    • Fragmenter
    • JChem Neo4j Cartridge
      • JChem Neo4j Cartridge History of Changes
    • Markush Overlap
    • MarvinSpace
      • MarvinSpace User's Guide
        • What is MarvinSpace
        • MarvinSpace GUI Overview
          • Canvas - MarvinSpace
          • Menu bar
            • File Menu
            • Edit Menu
            • Display Menu
              • Draw Type Submenu
              • Color Type Submenu
              • Quality Submenu
              • Depth Cue menu item
              • Anti-alias menu item
              • Options Menu
                • Visualizers Tab
                • Surface Tab
                • Secondary Structure Tab
                • Colors Tab
                • Controls Tab
            • Show Menu
              • Labels submenu
              • Surface submenu
              • Secondary Structure menu item
            • Animation Menu
            • Help Menu
          • Pop-up menu
          • Toolbar
            • Controls
            • Monitors
            • Pharmacophore models
            • Display tools
          • Selection Panel
        • How to use MarvinSpace features
        • MarvinSpace Operations
      • MarvinSpace Developer's Guide
        • MarvinSpace parameters
          • Scene parameters
          • Action parameters
          • Ligand parameters
          • Macromolecular parameters
          • Water parameters
          • Ion parameters
          • Pharmacophore parameters
          • Surface parameters
          • Secondary Structure parameters
        • Step-by-step example - displaying atom properties
        • Step-by-step code examples
        • Surface coloring in MarvinSpace
      • MarvinSpace History of Changes
    • Metabolizer
    • Plexus Suite
      • Quick Start Guide - Plexus Suite
      • Plexus Suite User Guide
        • Log in to Plexus Suite
        • The Plexus Suite Dashboard
        • Importing New Data
        • Exporting Your Data
        • Browsing in Your Data Set
          • Synchronized Database Views
        • Selecting Data
        • Searching in Your Database
          • Structure Search in Plexus Connect
        • Saved Queries
        • List Management
        • Sorting Data
        • Sharing Data with Other Users
        • Calculating Molecular Properties for Single Compounds
        • Adding calculated columns to tables
        • Scaffold Based Enumeration
        • Reaction Based Enumeration
        • Registering Molecules in the Corporate Database
        • Charts view
      • Plexus Suite Video Tutorials
      • Plexus Suite Administrator Guide
        • Plexus Suite Authentication
        • Sharing Schema Items Among Users
        • Business Flags
        • Row-level Security
        • Building blocks
        • Admin Tools
          • Messaging
          • Getting the Plexus Backend and Frontend Log Files
        • Adding JavaScript Files for Custom Functionality
        • Writing JavaScript Files for Custom Functionality
        • Integration with Chemaxon's Compound Registration System
        • Shared data sources in Plexus Connect
        • Configuration Files
        • Edit Views
        • Simple table
      • Installation and System Requirements of Plexus Suite
      • Plexus Suite Licensing
        • About Chemaxon Licensing - Plexus Suite
        • End User License Agreement (EULA) - Plexus Suite
        • Installing Licenses
        • Merging License Files
        • Frequently Asked Questions about Licensing - Plexus Suite
        • License Report - Plexus Suite
      • Getting Help and Support for Plexus Suite
        • Troubleshooting for Plexus Suite
      • Plexus Suite FAQ
      • Plexus Suite Privacy Policy
      • Terms of Use for the Plexus Suite Demo Site
      • Plexus Suite History of Changes
      • Schema Refresh Without Restart
    • JChem Web Services Classic
      • JChem Web Services Classic History of Changes