Structure Transformation

    The C:\Program Files\ChemAxon\JChem for Excel\Resources\Images folder contains the following images which can be used as icons for these functions:

    • AromatizeStructureAction.png

    • DearomatizeStructureAction.png

    • TwoDCleanStructureAction.png

    • ThreeDCleanStructureAction.png

    • HydrogenizeToStructureAction.png

    • DehydrogenizeStructureAction.png

    AromatizeStructureAction

    Transforms the molecule to the aromatic representation by using the basic transformation method set.

    images/download/attachments/1807120/Aromatize.png

    Aromatize

    For more information, see Aromatization.

    The AromatizeStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

    Ribbon button: images/download/attachments/1807120/Aromatize_Button.png

    DearomatizeStructureAction

    Transforms the molecule to the non-aromatic representation.

    images/download/attachments/1807120/Dearomatize.png

    Dearomatize

    The DearomatizeStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

    Ribbon button: images/download/attachments/1807120/Dearomatize_Button.png

    TwoDCleanStructureAction

    Calculates new 2D coordinates for the molecule.

    images/download/attachments/1807120/2DClean_Structure.png

    2DClean_Structure

    The TwoDCleanStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

    Ribbon button: images/download/thumbnails/1807120/2DClean_Structure_Button.png

    ThreeDCleanStructureAction

    Calculates new 3D coordinates for the molecule. Clean3D builds up conformers of fragments from which the best, that is, the lowest energy conformer is given back. The quality of the structures is measured by a simple energy function (Dreiding-type molecular mechanics).

    images/download/attachments/1807120/3DClean_Structure.png

    3DClean_Structure

    The ThreeDCleanStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

    Ribbon button: images/download/attachments/1807120/3DClean_Structure_Button.png

    HydrogenizeToStructureAction

    Adds explicit H atoms instead of the current implicit ones. Explicit hydrogens are displayed with atoms joining their neighbor while implicit hydrogens are displayed by atom symbols only.

    images/download/attachments/1807120/Hydrogenize_Structure.png

    Hydrogenize_Structure

    The HydrogenizeToStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

    Ribbon button: images/download/attachments/1807120/Hydrogenize_Structure_Button.png

    DehydrogenizeStructureAction

    Removes explicit H atoms and increases the number of implicit hydrogens.

    images/download/attachments/1807120/Dehydrogenize_Structure.png

    Dehydrogenize_Structure

    The DehydrogenizeStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

    Ribbon button: images/download/attachments/1807120/Dehydrogenize_Structure_Button.png