|ocrCorrection||converts names containing typical OCR (optical character recognition) errors (off by default). Example: convert the defective name "3-rnethyl-l-methoxynaphthalene" to SMILES
|-systematic||disable conversion of systematic names|
|-common||disable conversion of common names (such as aspirin )|
|-elements||disable conversion of the name of chemical elements, for instance carbon, sodium, .... Even though "carbon" is not converted, "methane" still is, since it is a molecule name for CH4, not an element.|
|-ions||disable conversion of atomic ion syntax, for instance "Ca2+".|
|-groups||disable conversion of groups and fragments, such as "oxo" or "methyl".|
|-cas||disable the conversion of CAS registry numbers|
|-casNames||disable the conversion of CAS names|
|nameField=FIELD||sets the field/property that stores the original name. By default, the molecule title is used.|
|dict= PATH||specify the location of the custom dictionary. Example:
|webservice= URL||enable the usage of a custom webservice at the given URL|
Some of these options are mainly useful when configuring which names Document to Structure recognizes.
To enable an option, a + sign can be used before the option name. For instance, both forms ocrCorrection and +ocrCorrection are accepted to enable this option.