Aromatize

    This action performs aromatization according to the selected aromatization method.

    Set aromatization method by using one of the following options:

    • general: general (Daylight) type aromatization (aromatize) (default)

    • basic: basic (ChemAxon) type aromatization (aromatize:b)

    • loose: loose type aromatization (aromatize:l)

    See the aromaticity documentationfor detailed description of the above methods.

    Example :

    Action Input Output
    Aromatize:general (aromatize) images/download/attachments/20417567/aromatize1_in.png input(1) of aromatize action images/download/attachments/20417567/aromatize1_general_out.png output of general aromatization(1)
    images/download/attachments/20417567/aromatize2_in.png input(2) of aromatize action images/download/attachments/20417567/aromatize2_general_out.png output of general aromatization(2)
    images/download/attachments/20417567/aromatize3_in.png input(3) of aromatize action images/download/attachments/20417567/aromatize3_in.png output of general aromatization(3)
    Aromatize:basic (aromatize:b) images/download/attachments/20417567/aromatize1_in.png input(1) of aromatize action images/download/attachments/20417567/aromatize1_general_out.png output of basic aromatization(1)
    images/download/attachments/20417567/aromatize2_in.png input(2) of aromatize action images/download/attachments/20417567/aromatize2_basic_out.png output of basic aromatization(2)
    images/download/attachments/20417567/aromatize3_in.png input(3) of aromatize action images/download/attachments/20417567/aromatize3_in.png output of basic aromatization(3)
    Aromatize:loose (aromatize:l) images/download/attachments/20417567/aromatize1_in.png input(1) of aromatize action images/download/attachments/20417567/aromatize1_general_out.png output of loose aromatization(1)
    images/download/attachments/20417567/aromatize2_in.png input(2) of aromatize action images/download/attachments/20417567/aromatize2_basic_out.png output of loose aromatization(2)
    images/download/attachments/20417567/aromatize3_in.png input(3) of aromatize action images/download/attachments/20417567/aromatize3_loose_out.png output of loose aromatization(3)

    Note :

    • Aromatization does not change existing aromatic bonds, so if you need to rearomatize an incorrectly aromatized molecule, please place action "Dearomatize" before "Aromatize".

    • Example of action sequence: if an action transforms aromatized functional groups, aromatization should occur before transformation in order to receive the correct substructure search results.