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- Form Scripts
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- Create a New ChemTerm Field
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- Java Plugins
- IJC Plugin Quick Start
- IJC Hello World Plugin
- IJC Plugin tutorial - MyAddField plugin
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- IJC Plugin tutorial - Renderer Example
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- Java Plugins and Java Web Start
- Instant JChem FAQ
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- Markush Editor
- Marvin Desktop Suite
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- Trainer Engine
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- Tautomerization and tautomers
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- Chemaxon .NET API
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- User Guide
- Developer Guide
- Glossary
- Document to Structure
- JChem Base
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- Query Guide
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- Standardization
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- Appendix
- Matching Query - Target Examples
- jcsearch Command Line Tool
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- Homology Groups in Markush Structures
- Query Guide
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- JChem Choral
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- Introduction
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- JChem Oracle Cartridge
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- JKlustor
- Markush Tools
- Marvin JS
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- Editor Overview
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- User Guide
- Marvin
- Molconvert
- Name to Structure
- Reactor
- Reactor User's Guide
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- Reactor in KNIME
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- API, Web Services
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- Screen
- Standardizer
- Standardizer User's Guide
- Standardizer Introduction
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- Working with Standardizer
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- Add Explicit Hydrogens
- Alias to Atom
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- Aromatize
- Clean 2D
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- Contract S-groups
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- Map
- Map Reaction
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- Replace Atoms
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- Standardizer Developer's Guide
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- Standardizer History of Changes
- Standardizer User's Guide
- Structure Checker
- Structure Checker User's Guide
- Introduction
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- Abbreviated Group
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- Alias
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- Solvent
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- Straight Double Bond
- Substructure
- Three Dimension 3D
- Unbalanced Reaction
- Unused R-group
- Valence Error
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- Wiggly Bond
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- R-group Reference Error (discontinued)
- Wedge Error (discontinued)
- Creating a Configuration
- Custom Checkers and Fixers
- Interfaces of Structure Checker
- Checker List
- Structure Checker Developer's Guide
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- Structure Checker Licensing
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- Structure to Name
- Third-Party Integration
- JChem for Office
- Administration Guide
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- JChem for Excel User's Guide
- JChem for Excel Ribbon
- Working with Structures in Excel
- Add a Structure to a Cell
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- Print Structures
- Copy and Paste with JChem for Excel
- Convert from Structures
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- Convert ISIS, ChemDraw, Accord, and Insight for Excel Files to JChem for Excel Files
- Calculations with Third-Party Services
- Specify External Image and Name Services
- Importing from Databases in JChem for Excel
- Manage Connections
- Add an Oracle Connection in JChem for Excel
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- Favorite Entities in JChem for Excel
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- R-group Decomposition in JChem for Excel
- SAR Table Generation
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- Options in JChem for Excel
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- Favorite Entities in JChem for Office
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- Import from Database in JChem for Office
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- Manage Connections in JChem for Office
- Import from File in Jchem for Office
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- Switching JChem for Office to Lite Mode
- User Interface Customization in JChem for Office
- JChem for Office Lite User's Guide
- JChem for Office Known Issues
- Troubleshooting
- Troubleshooting - JChem for Office
- Structures are not displayed in Excel cell
- JChem for Office Tutorial Videos
- Enable JChemExcel.Functions add-in after it gets disabled
- Structure rendering issues when moving the Excel window between different screens
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- CAS conversion and license key do not work
- Diagnostic Tool
- JChem for Excel User's Guide
- History of Changes
- KNIME Nodes
- Pipeline Pilot Components
- JChem for Office
- Cross-Product Documentation
- Chemaxon Configuration Folder
- Chemical Fingerprints
- Chemical Terms
- File Formats
- Basic export options
- Compression and Encoding
- Document formats
- Graphics Formats
- Molecule file conversion with Molconvert
- Molecule Formats
- CML
- MDL MOL files
- Daylight SMILES related formats
- Chemaxon SMILES extensions
- IUPAC InChI, InChIKey, RInChI and RInChIKey
- Name
- Sequences - peptide, DNA, RNA
- FASTA file format
- Protein Data Bank (PDB) file format
- Tripos SYBYL MOL and MOL2 formats
- XYZ format
- Gaussian related file formats
- Markush DARC format - VMN
- CSV
- Input and Output System
- License Management
- Long-Term Support (LTS)
- Notice about CAS Registry Numbers®
- Public Repository
- Scientific Background
- Structure Representation
- Structure Representation - Class Representation
- Aromaticity
- Implicit, Explicit and Query Hydrogens
- Assigning stereochemistry descriptors
- Cleaning options
- Deprecated and Removed Methods
- Relative configuration of tetrahedral stereo centers
- Iterator Factory
- Atom and bond-set handling
- Graphic object handling
- Supported Java Versions
- Legal
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- BioEddie
- Biomolecule Toolkit
- Document to Database
- Fragmenter
- JChem Neo4j Cartridge
- JChem Web Services Classic
- Markush Overlap
- MarvinSpace
- MarvinSpace User's Guide
- MarvinSpace Developer's Guide
- MarvinSpace History of Changes
- Metabolizer
Chiral Flag Error
-
Checker searches for incorrectly set chiral flags: "Absolute" flag can only be set when all chirality information is specified for the given molecule.
-
Fixer offers removing the chiral flag (
removechiralflag).Chiral Flag Error Checker ( chiralflagerror)Warning: Fix Fix Chiral Flag ( removechiralflag)Detect invalid chiral flag 
ex_chiralflag_ch
ex_chiralflag_f