Structure Transformation

The C:\Program Files\ChemAxon\JChem for Excel\Resources\Images folder contains the following images which can be used as icons for these functions:

  • AromatizeStructureAction.png

  • DearomatizeStructureAction.png

  • TwoDCleanStructureAction.png

  • ThreeDCleanStructureAction.png

  • HydrogenizeToStructureAction.png

  • DehydrogenizeStructureAction.png

AromatizeStructureAction

Transforms the molecule to the aromatic representation by using the basic transformation method set.

images/download/attachments/1807120/Aromatize.png
Aromatize

For more information, see Aromatization.

The AromatizeStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

Ribbon button: images/download/attachments/1807120/Aromatize_Button.png

DearomatizeStructureAction

Transforms the molecule to the non-aromatic representation.

images/download/attachments/1807120/Dearomatize.png
Dearomatize

The DearomatizeStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

Ribbon button: images/download/attachments/1807120/Dearomatize_Button.png

TwoDCleanStructureAction

Calculates new 2D coordinates for the molecule.

images/download/attachments/1807120/2DClean_Structure.png
2DClean_Structure

The TwoDCleanStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

Ribbon button: images/download/thumbnails/1807120/2DClean_Structure_Button.png

ThreeDCleanStructureAction

Calculates new 3D coordinates for the molecule. Clean3D builds up conformers of fragments from which the best, that is, the lowest energy conformer is given back. The quality of the structures is measured by a simple energy function (Dreiding-type molecular mechanics).

images/download/attachments/1807120/3DClean_Structure.png
3DClean_Structure

The ThreeDCleanStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

Ribbon button: images/download/attachments/1807120/3DClean_Structure_Button.png

HydrogenizeToStructureAction

Adds explicit H atoms instead of the current implicit ones. Explicit hydrogens are displayed with atoms joining their neighbor while implicit hydrogens are displayed by atom symbols only.

images/download/attachments/1807120/Hydrogenize_Structure.png
Hydrogenize_Structure

The HydrogenizeToStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

Ribbon button: images/download/attachments/1807120/Hydrogenize_Structure_Button.png

DehydrogenizeStructureAction

Removes explicit H atoms and increases the number of implicit hydrogens.

images/download/attachments/1807120/Dehydrogenize_Structure.png
Dehydrogenize_Structure

The DehydrogenizeStructureAction is not available in the JChem for Excel ribbon/context menu/menu/toolbar by default, but it is possible to make it available by customizing the ribbon/context menu/menu/toolbar.

Ribbon button: images/download/attachments/1807120/Dehydrogenize_Structure_Button.png