Structure Parameters

Parameter

Meaning

Default

atomSetColor0atomSetColor1...atomSetColor63

Atom set color as a hexadecimal value.

bondSetColor1...bondSetColor63

Bond set color as a hexadecimal value.

importConv

Conversion(s) after molecule loading. Currently, the following options are implemented:

"a" or "+a"

General aromatization

"a_bas" or "+a_bas"

Basic aromatization

"-a"

dearomatization

"H" or "+H"

add explicit H atoms

"-H"

remove explicit H atoms

"c"

automatic cleaning

cleanDim

The number of space dimensions for cleaning.

  • 2 - two-dimensional cleaning

  • 3 - three-dimensional cleaning

See also: cleanOpts, importConv

2

cleanOpts

Options for 2D or 3D cleaning.
cleanOpts accepts the same parameter values as clean2dOpts or clean3dOpts depending on the cleaning dimension (cleanDim).

clean2dOpts

Options for 2D cleaning (0D->2D) See base 2D cleaning options

clean3dOpts

Options for 3D cleaning (0D->3D) See base 3D cleaning options

setColoringEnabled

Atom/bond set coloring.

true

valenceCheckEnabled

Check valence errors in molecules on the SketchPanel (true) or not (false).

true