Secondary Structure parameters

    Parameter Meaning Possible values Default
    SecondaryStructure.DrawType Draw type of all secondary structure components of the scene Trace, Tube, PipeAndPlank, RibbonLines, Ribbon, CartoonSquare, * Cartoon Cartoon
    SecondaryStructure.ColorType Color type of all secondary structure components of the scene "Constant", "Residue", "Chain", "Rainbow", "B-factor", "SecondaryStructure" SecondaryStructure
    SecondaryStructure.Quality Quality of all secondary structure components of the scene "High", "Medium", "Low" Medium
    SecondaryStructure.Color The color used in constant color mode java.awt.Color #ffffff
    SecondaryStructure.HelixWidth . Float 1.2
    SecondaryStructure.HelixDepth . Float 0.3
    SecondaryStructure.HelixShift . Float 2.5
    SecondaryStructure.HelixArrow . true, false true
    SecondaryStructure.HelixArrowWidth . Float 3.8
    SecondaryStructure.SheetWidth . Float 1.2
    SecondaryStructure.SheetDepth . Float 0.4
    SecondaryStructure.SheetArrow . true, false true
    SecondaryStructure.SheetArrowWidth . Float 3.8
    SecondaryStructure.CoilWidth . Float 0.3
    SecondaryStructure.CoilDepth . Float 0.3
    SecondaryStructure.CoilUniform . true, false true
    SecondaryStructure.Threads . Integer 6