MarvinView 3D and Animation

Parameter

Meaning

Default

animate

Start an XYZ animation sequence, or starts rotating the specified 3D molecule(s).

Possible values: off, all, or a comma-separated list of molecule indices (0...n-1).

Note: This parameter does not apply to beans, only to the applet.

off

animDelay

Delay (seconds) before repeating the animation.

0

animFPS

The number of frames per second in 3D animation.

10

animSync

Whether the animations in different cells should be synchronized.

false

ballRadius

Ball radius for the ball and stick rendering mode, in units of the covalent radius.

0.5

rendering

Rendering style.

  • wireframe - wireframe

  • wireknobs - wireframe with knobs

  • sticks - 3D sticks

  • ballstick - ball & stick

  • spacefill - balls

wireframe

script
script0
script1
script2
...

A script containing a subset of RashMol commands delimited by semicolons. If this applet parameter is specified, then the mol parameter is neglected. The molecule(s) must be loaded using the load command in the script.

Note: To load the script from a file, use the script command:

<param name="script" value="script myscript.spt">

spin
spin0
spin1
spin2
...

Spinning rate and axis for animated molecules. The spinning rate is specified in degrees per second, the axis is specified with a 3D vector. The numbers are separated by commas.

Note: XYZ animations do not spin by default, only if this parameter is set.

36,0,1,0

stickThickness

3D stick diameter for "sticks" and ball and stick rendering modes, in Angstroms.

0.1

wireThickness

Line thickness for wireframe rendering modes in Angstroms.

0.064