Map Reaction

This action assigns map numbers to the corresponding atoms on the two sides of the reaction arrow.
Options:

  • Select the mapping style as Complete, Matching, or Changing.

  • "Map reaction" can also Mark bonds that have changed in the reaction.

  • Keep existing mapping (on by default)

Note : Reactions are mapped by the AutoMapper User's Guide tool.
Action "mapreaction" considers only reactions; molecules or multiple fragments are not mapped.

Example :

Action

Input

Output

Map Reaction
(mapreaction)

images/download/attachments/1803699/aromatize1_in.png
map reaction input

No action will be performed

Map Reaction
(mapreaction)

images/download/attachments/1803699/map_atom2_in.png
map reaction input

images/download/attachments/1803699/map_atom2_out.png
map reaction output