Map

This action assigns map numbers to atoms of a molecule or a reaction. Map numbers are assigned in a given order to each atom of the input structure.
Options in case of reaction file input:

  • Select the mapping style as Complete, Matching, or Changing.

  • Map action can also Mark bonds that have changed in the reaction.

  • Keep existing mapping (on by default)

Note : Reactions are mapped by the AutoMapper User's Guide tool.

Example :

Action

Input

Output

Map
(map)

images/download/attachments/1803698/aromatize1_in.png
Map input

images/download/attachments/1803698/map_atom_out.png
Map output

Map
(map)

images/download/attachments/1803698/map_atom2_in.png
map input (reaction)

images/download/attachments/1803698/map_atom2_out.png
map output (reaction)