Bond Menu

This menu allows changing the type of a bond and makes bond properties available, for example, bold, topology, reacting center, and many more.

Menu item

Icon

Description

Type > Single

images/download/thumbnails/1805520/bonds.png

Changes the selected bond type to Single.

Type > Double

images/download/thumbnails/1805340/bond_double24.png

Changes the selected bond type to Double.

Type > Triple

images/download/thumbnails/1805340/bond_triple24.png

Changes the selected bond type to Triple.

Type > Aromatic

images/download/thumbnails/1805340/bond_doubleoraromatic24.png

Changes the selected bond type to Aromatic.

Type > Single Up

images/download/thumbnails/1805340/bond_singleup24.png

Changes the selected bond type to Single Up. (Active only in 2D.)

Type > Single Down

images/download/thumbnails/1805340/bond_singledown24.png

Changes the selected bond type to Single Down. (Active only in 2D.)

Type > Single Up or Down

images/download/thumbnails/1805340/bond_singleupordown24.png

Changes the selected bond type to Single Up or Down.

Type > Double Cis or Trans

images/download/thumbnails/1805340/bond_doublecisortrans24.png

Changes the selected bond type to Double Cis or Trans.

Type > Double C/T or Unspec

images/download/thumbnails/1805980/bond-doublect24.png

Changes the selected bond type to Double Cis/Trans or Unspec.

Type > Single or Double

images/download/thumbnails/1805340/bond_singleordouble24.png

Changes the selected bond type to Single or Double.

Type > Single or Aromatic

images/download/thumbnails/1805340/bond_singleoraromatic24.png

Changes the selected bond type to Single or Aromatic.

Type > Double or Aromatic

images/download/thumbnails/1805340/bond_doubleoraromatic24.png

Changes the selected bond type to Double or Aromatic.

Type > Any

images/download/thumbnails/1805980/bond-any24.png

Changes the selected bond type to Any.

Type > Coordinate

images/download/thumbnails/1805340/bond_coordinative24.png

Changes the selected bond type to Coordinate.

Bold

images/download/thumbnails/1805520/bond-bold-tool24.png

Changes the selected bond to Bold. For more information, see the Bold tool.

Hashed

images/download/thumbnails/1805520/hashed-bond-24.png

Changes the selected bond to Hashed.

Topology > None

images/download/thumbnails/1805520/bonds.png

Unsets the bond topology property.

Topology > In Ring

images/download/thumbnails/1805340/ring24.png

Sets a bond property so that when the molecule is used as a query, the specified bond must be in a ring to score a hit.

Topology > In Chain

images/download/thumbnails/1805340/chain24.png

Sets a bond property so that when the molecule is used as a query, the specified bond must be in a chain to score a hit.

Reacting Center > None

images/download/thumbnails/1805520/bonds.png

Unsets reacting center query feature of the selected bond.

Reacting Center > Center

images/download/thumbnails/1805340/center24.png

Sets reacting center query feature on the selected bond: the bond takes part in the reaction.

Reacting Center > Make or Break

images/download/thumbnails/1805340/make_or_break24.png

Sets reacting center query feature on the selected bond: the bond is created or disappears in the reaction.

Reacting Center > Change

images/download/thumbnails/1805340/change24.png

Sets reacting center query feature on the selected bond: the bond remains in the reaction, but its bond type changes, for example, from single to double.

Reacting Center > Make and Change

images/download/thumbnails/1805340/make_and_change24.png

Sets reacting center query feature on the selected bond: currently it works exactly as Center.

Reacting Center > Not Center

images/download/thumbnails/1805340/not_center24.png

Sets reacting center query feature on the selected bond: the bond must not change in the reaction.

Stereo Search

images/download/thumbnails/1805340/stereo_search24.png

Uses stereo configuration of the specified double bond when this molecule is used as a query.

Align > Horizontally

N/A

Alters the molecule so that the selected bond is oriented horizontally.

Align > Vertically

N/A

Alters the molecule so that the selected bond is oriented vertically.

Ligand order

N/A

Changes the order of the attachment of R-group ligands.

Edit Properties

N/A

Bond properties can be edited from this menu.